|Database Searches||DNA Tools||Protein Tools|
|SRS-EMBL General Sequence database query||Translate a DNA sequence at ExPASy, at EBI or at the Virtual Genome Center||Predict secondary structure with Burkhard Rost's PHD - now in New York! or David Jones' PSIpred.|
|SRS5-Oslo General Sequence database query (unavailable)||Pairwise BLAST at NCBI||Use Inge Jonassen's web PRATT to find patterns in a set of protein sequences.|
|SRS6-EBI General Sequence database query||Pairwise alignment at BCM||Predict Transmembrane regions and coiled-coil regions at ISREC/EMBnet-CH|
|Querey Pfam domain database||Pairwise
Blast of protein sequences;
[change program to Blastp]
|BLAST: Database searches||
Self-Dotplots at the Virtual Genome Center
|Pairwise alignment at ExPASy|
|BCM: Database searches, patterns.||Sequence conversion with Don Gilbert's ReadSeq at BIMASS.||Protein Parameters, aa-composition, mw, pI etc. at ExPASy|
|Scan your sequence for Prosite patterns with ScanProsite at ExPASy||Multiple
Sequece Alignments, ClustalW, PIMA etc. at BCM.
But use rather Clustal_X
including a HMM-based protein domain searching system by Sean Eddy et al. Washington U., St. Louis.
|PRINTS Protein Motif Database at U. College London||PCR primer selection at U. Minnesota||Random sequence generator at ExPASy.|
|ENTREZ: Nucleotide sequence database query at NCBI||Estimation of Tm for an oligo at U. Minnesota.||Generate a 3D-model of your protein using Swiss-Model at ExPASy.|
|ENTREZ: Protein sequence database query at NCBI||GRAIL gene prediction at ORNL||www-BoxShade, decoration of multiple alignments at the Swiss EMBnet node||BLAST unfinished human genome||Sequence utilities at BCM, including primer selection, reverse complement, restriction sites, translation, identification of repetitive sequences.||PDB - Protein structure databank and RasMol for viewing.|
|BLAST unfinished microbial genomes.||CINEMA: Multiple sequence editor from T.K.Attwood.||PSORT
- Prediction of protein sorting signals,
including nuclear localisation signals at IMCB, Osaka University.
Wonder what happened to the NLS-predictor at Cambridge
|INTERPRO - integrated protein domain database.||Protein Machine at EBI||Multiple Sequece Alignments, ClustalW, PIMA etc. at BCM|