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Ketil Malde

Associate professor II
  • E-mailKetil.Malde@uib.no
  • Visitor Address
    HIB - Thormøhlensgt. 55
  • Postal Address
    Postboks 7803
    5020 Bergen
Journal articles
  • Malde, Ketil; Seliussen, Bjørghild Breistein; Sanchez, Maria Quintela; Dahle, Geir; Besnier, Francois; Skaug, Hans J.; Øien, Nils Inge; Solvang, Hiroko Kato; Haug, Tore; Skern-Mauritzen, Rasmus; Kanda, Naohisa; Pastene, Luis A.; Jonassen, Inge; Glover, Kevin. 2017. Whole genome resequencing reveals diagnostic markers for investigating global migration and hybridization between minke whale species. BMC Genomics. 18:76: 1-11. doi: 10.1186/s12864-016-3416-5
  • Eichner, Christiane; Dalvin, Sussie Trine; Skern-Mauritzen, Rasmus; Malde, Ketil; Kongshaug, Heidi; Nilsen, Frank. 2015. Characterization of a novel RXR receptor in the salmon louse (Lepeophtheirus salmonis, Copepoda) regulating growth and female reproduction. BMC Genomics. 16:81. 22 pages. doi: 10.1186/s12864-015-1277-y
  • Besnier, Francois; Kent, Matthew Peter; Skern-Mauritzen, Rasmus; Lien, Sigbjørn; Malde, Ketil; Edvardsen, Rolf; Taylor, Simon; Ljungfeldt, Lina; Nilsen, Frank; Glover, Kevin. 2014. Human-induced evolution caught in action: SNP-array reveals rapid amphi-atlantic spread of pesticide resistance in the salmon ecotoparasite Lepeophtheirus salmonis. BMC Genomics. 15. 18 pages. doi: 10.1186/1471-2164-15-937
  • Edvardsen, Rolf; Dalvin, Sussie Trine; Furmanek, Tomasz; Malde, Ketil; Mæhle, Stig; Kvamme, Bjørn Olav; Skern-Mauritzen, Rasmus. 2014. Gene expression in five salmon louse (Lepeophtheirus salmonis, Krøyer 1837) tissues. Marine Genomics. 18: 39-44. doi: 10.1016/j.margen.2014.06.008
  • Malde, Ketil. 2014. Estimating the information value of polymorphic sites using pooled sequences. BMC Genomics. 15. 11 pages. doi: 10.1186/1471-2164-15-S6-S20
  • Malde, Ketil. 2014. Simulating a population genomics data set using FlowSim. BMC Research Notes. 7:68. doi: 10.1186/1756-0500-7-68
  • Balzer, Susanne; Malde, Ketil; Grohme, Markus A.; Jonassen, Inge. 2013. Filtering duplicate reads from 454 pyrosequencing data. Bioinformatics. 29: 830-836. doi: 10.1093/bioinformatics/btt047
  • Malde, Ketil; Furmanek, Tomasz. 2013. Increasing Sequence Search Sensitivity with Transitive Alignments. PLoS ONE. 8. 7 pages. doi: 10.1371/journal.pone.0054422
  • Skern-Mauritzen, Rasmus; Malde, Ketil; Besnier, Francois; Nilsen, Frank; Jonassen, Inge; Reinhardt, Richard; Koop, Ben F.; Dalvin, Sussie Trine; Mæhle, Stig; Kongshaug, Heidi; Glover, Kevin. 2013. How does sequence variability affect de novo assembly quality? Journal of Natural History. 47: 901-910. doi: 10.1080/00222933.2012.738833
  • Kleppe, Lene; Edvardsen, Rolf; Kuhl, H; Malde, Ketil; Furmanek, Tomasz; Drivenes, O; Reinhardt, R; Taranger, Geir Lasse; Wargelius, Anna. 2012. Maternal 3 ' UTRs: from egg to onset of zygotic transcription in Atlantic cod. BMC Genomics. 13. 14 pages. doi: 10.1186/1471-2164-13-443
  • Balzer, Susanne; Malde, Ketil; Jonassen, Inge. 2011. Systematic exploration of error sources in pyrosequencing flowgram data. Bioinformatics. 27: I304-I309. doi: 10.1093/bioinformatics/btr251
  • Edvardsen, Rolf; Malde, Ketil; Mittelholzer, Christian; Taranger, Geir Lasse; Nilsen, Frank. 2011. EST resources and establishment and validation of a 16 k cDNA microarray from Atlantic cod (Gadus morhua). Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics. 6: 23-30. doi: 10.1016/j.cbd.2010.06.002
  • Malde, Ketil. 2011. Flower: extracting information from pyrosequencing data. Bioinformatics. 27: 1041-1042. doi: 10.1093/bioinformatics/btr063
  • Sagstad, Anita; Grotmol, Sindre; Kryvi, Harald; Krossøy, Christel; Totland, Geir Kåre; Malde, Ketil; Wang, Shou; Hansen, Tom Johnny; Wargelius, Anna Sofie Troedsson. 2011. Identification of vimentin- and elastin-like transcripts specifically expressed in developing notochord of Atlantic salmon (Salmo salar L.). Cell and Tissue Research. 346: 191-202. doi: 10.1007/s00441-011-1262-y
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Paulsen, Jonas; Solbakken, Monica Hongrø; Sharma, Animesh; Wetten, Ola Frang; Lanzén, Anders; Winer, Roger; Knight, James; Vogel, Jan-Hinnerk; Aken, Bronwen; Andersen, Øivind; Lagesen, Karin; Tooming-Klunderud, Ave; Edvardsen, Rolf; Kirubakaran, G. Tina; Espelund, Mari; Nepal, Chirag; Previti, A. Christopher; Karlsen, Bård Ove; Moum, Truls; Skage, Morten; Berg, Paul Ragnar; Gjøen, Tor; Kuhl, Heiner; Thorsen, Jim; Malde, Ketil; Reinhardt, Richard; Du, Lei; Johansen, Steinar Daae; Searle, Steve; Lien, Sigbjørn; Nilsen, Frank; Jonassen, Inge; Omholt, Stig W; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd. 2011. The genome sequence of Atlantic cod reveals a unique immune system. Nature. 477: 207-210. doi: 10.1038/nature10342
  • Balzer, Susanne; Malde, Ketil; Lanzén, Anders; Sharma, Animesh; Jonassen, Inge. 2010. Characteristics of 454 pyrosequencing data-enabling realistic simulation with flowsim. Bioinformatics. 26: i420-i425. doi: 10.1093/bioinformatics/btq365
  • Malde, Marian Kjellevold; Bugel, S; Kristensen, M.; Malde, Ketil; Graff, Ingvild Eide; Pedersen, Jan I. 2010. Calcium from salmon and cod bone is well absorbed in young healthy men: a double-blinded randomised crossover design. Nutrition & Metabolism. 7. 9 pages. doi: 10.1186/1743-7075-7-61
  • Patel, Sonal; Malde, Kjetil; Lanzén, Anders; Hetlelid Olsen, Rolf; Nerland, Audun H. 2009. Identification of immune related genes in Atlantic halibut (Hippoglossus hippoglossus L.) following in vivo antigenic and in vitro mitogenic stimulation. Fish and Shellfish Immunology. 27: 729-738. doi: 10.1016/j.fsi.2009.09.008
  • Malde, Ketil. 2008. The effect of sequence quality on sequence alignment. Bioinformatics. 24: 897-900.
  • Malde, Ketil; Jonassen, Inge. 2008. Repeats and EST analysis for new organisms. BMC Genomics. 9. 7 pages. doi: 10.1186/1471-2164-9-23
  • Malde, Ketil; Giegerich, Robert. 2006. Calculating PSSM probabilities with lazy dynamic programming. Journal of functional programming (Print). 16: 75-81. doi: 10.1017/S0956796805005708
  • Malde, Ketil; Schneeberger, Korbinian; Coward, Eivind; Jonassen, Inge. 2006. RBR: library-less repeat detection for ESTs. Bioinformatics. 22: 2232-2236.
  • Malde, Ketil; Coward, Eivind; Jonassen, Inge. 2005. A graph based algorithm for generating EST consensus sequences. Bioinformatics. 21: 1371-1375. Published 2005-04-15.
  • Schneeberger, Korbinian; Malde, Ketil; Coward, Eivind; Jonassen, Inge. 2005. Masking repeats while clustering ESTs. Nucleic Acids Research. 33: 2176-2180.
  • Malde, Ketil; Coward, Eivind; Jonasen, Inge. 2003. A Fast Algorithm for EST Clustering using Suffix Arrays. Bioinformatics.
  • Malde, Ketil; Coward, Eivind; Jonassen, Inge. 2003. Fast Sequence Clustering Using a Suffix Array Algorithm. Bioinformatics. 19: 1221-1226.
Reports and theses
  • Malde, Ketil. 2005. Algorithms for the Analysis of Expressed Sequence Tags.

More information in national current research information system (CRIStin)