Pål Puntervoll's picture
Pål
Puntervoll
Researcher
Visit Address: 
Kalfarveien 31
5018 Bergen
Room: 
5135
Postal Address: 
Postboks 7804
5018 Bergen
Phone: 
+47 55 58 40 78
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MOL204 - Applied bioinformatics (course description|home page)

Journal articles
  • Taxt, Arne Michael; Diaz, Yuleima; Bacle, Amélie; Grauffel, Cédric; Reuter, Nathalie; Aasland, Rein; Sommerfelt, Halvor; Puntervoll, Pål. 2014. Characterization of immunological cross-reactivity between enterotoxigenic Escherichia coli heat-stable toxin and human guanylin and uroguanylin. Infection and Immunity. 82: 2913-2922. doi: 10.1128/IAI.01749-14
  • Pagarete, Antonio; Lanzén, Anders; Puntervoll, Pål; Sandaa, Ruth-Anne; Larsen, Aud; Larsen, Jens Borggaard; Allen, Michael J; Bratbak, Gunnar. 2013. Genomic sequence and analysis of EhV-99B1, a new coccolithovirus from the Norwegian fjords. Intervirology. 56: 60-66. doi: 10.1159/000341611
  • Schäuble, Sascha; Stavrum, Anne-Kristin; Puntervoll, Pål; Schuster, Stefan; Heiland, Ines. 2013. Effect of substrate competition in kinetic models of metabolic networks. FEBS Letters. 587: 2818-2824. doi: 10.1016/j.febslet.2013.06.025
  • Stavrum, Anne-Kristin; Heiland, Ines; Schuster, Stefan; Puntervoll, Pål; Ziegler, Mathias. 2013. Model of tryptophan metabolism, readily scalable using tissue-specific gene expression data. Journal of Biological Chemistry. 288: 34555-34566. doi: 10.1074/jbc.M113.474908
  • Subramanian, Sattanathan; Sztromwasser, Pawel Szymon; Puntervoll, Pål; Petersen, Kjell. 2013. Pipelined data-flow delegated orchestration for data-intensive eScience workflows. International Journal of Web Information Systems. 9: 204-218. doi: 10.1108/IJWIS-05-2013-0012
  • Christoforou, Andrea; Dondrup, Michael; Mattingsdal, Morten; Mattheisen, Manuel; Giddaluru, Sudheer; Nöthen, Markus M.; Rietschel, Marcella; Cichon, Sven; Djurovic, Srdjan; Andreassen, Ole Andreas; Jonassen, Inge; Steen, Vidar Martin; Puntervoll, Pål; Le Hellard, Stephanie. 2012. Linkage-disequilibrium-based binning affects the interpretation of GWASs. American Journal of Human Genetics. 90: 727-733. doi: 10.1016/j.ajhg.2012.02.025
  • Gossmann, Toni; Ziegler, Mathias; Puntervoll, Pål; de Figueiredo, Luis F.; Schuster, Stefan; Heiland, Ines. 2012. NAD(+) biosynthesis and salvage - a phylogenetic perspective. The FEBS Journal. 279: 3355-3363. doi: 10.1111/j.1742-4658.2012.08559.x
  • Karlsen, Odd Andre; Puntervoll, Pål; Goksøyr, Anders. 2012. Mass spectrometric analyses of microsomal cytochrome P450 isozymes isolated from beta-naphthoflavone-treated Atlantic cod (Gadus morhua) liver reveal insights into the cod CYPome. Aquatic Toxicology. 108: 2-10. doi: 10.1016/j.aquatox.2011.08.018
  • Karlsen, Odd Andre; Yadetie, Fekadu; Eide, Marta; Bjørneklett, Silje; Berg, Karin; Puntervoll, Pål; Hogstrand, Christer; Goksøyr, Anders. 2012. Integrative environmental genomics of cod (Gadus morhua) reveal the mechanisms underlying MeHg- and PCB153 induced toxicity. Comparative Biochemistry and Physiology A. 163: S49-S49. doi: 10.1016/j.cbpa.2012.05.143
  • Berg, Karin; Puntervoll, Pål; Klungsøyr, Jarle; Goksøyr, Anders. 2011. Brain proteome alterations of Atlantic cod (Gadus morhua) exposed to PCB 153. Aquatic Toxicology. 105: 206-217. doi: 10.1016/j.aquatox.2011.06.010
  • Jørgensen, Katarina Mariann; Hjelle, Sigrun Margrethe; Øye, Ola Kristoffer; Puntervoll, Pål; Reikvam, Håkon; Skavland, Jørn; Anderssen, Endre; Bruserud, Øystein; Gjertsen, Bjørn Tore. 2011. Untangling the intracellular signalling network in cancer - a strategy for data integration in acute myeloid leukemia. Journal of Proteomics. 74: 269-281. doi: 10.1016/j.jprot.2010.11.003
  • Sztromwasser, Pawel Szymon; Puntervoll, Pål; Petersen, Kjell. 2011. Data partitioning enables the use of standard SOAP Web Services in genome-scale workflows. Journal of Integrated Bioinformatics (JIB). 20 pages. doi: 10.2390/biecoll-jib-2011-163
  • Berg, Karin; Puntervoll, Pål; Valdersnes, Stig; Goksøyr, Anders. 2010. Responses in the brain proteome of Atlantic cod (Gadus morhua) exposed to methylmercury. Aquatic Toxicology. 100: 51-65. doi: 10.1016/j.aquatox.2010.07.008
  • Berge, Elisabet Ognedal; Knappskog, Stian; Geisler, Stephanie; Staalesen, Vidar; Pacal, Marec; Børresen-Dale, Anne-Lise; Puntervoll, Pål; Lillehaug, Johan R.; Lønning, Per Eystein. 2010. Identification and characterization of retinoblastoma gene mutations disturbing apoptosis in human breast cancers. Molecular Cancer. 9. 13 pages. doi: 10.1186/1476-4598-9-173
  • Gould, Cathryn M.; Diella, Francesca; Via, Allegra; Puntervoll, Pål; Gemünd, Christine; Chabanis-Davidson, Sophie; Michael, Sushama; Sayadi, Ahmed; Bryne, Jan Christian; Chica, Claudia; Seiler, Markus; Davey, Norman E.; Haslam, Neill; Weatheritt, Robert J.; Budd, Aidan; Hughes, Timothy; Pas, Jakub; Rychlewski, Leszek; Trave, Gilles Michel; Aasland, Rein; Helmer-Citterich, Manuela; Linding, Rune; Gibson, Toby J. 2010. ELM: the status of the 2010 eukaryotic linear motif resource. Nucleic Acids Research. 38: D167-D180. doi: 10.1093/nar/gkp1016
  • Kalas, Matus; Puntervoll, Pål; Joseph, Alexandre; Bartaševičiūtė, Edita; Töpfer, Armin; Venkataraman, Prabakar; Pettifer, Steve; Bryne, Jan Christian; Ison, Jon; Blanchet, Christophe; Rapacki, Kristoffer; Jonassen, Inge. 2010. BioXSD: the common data-exchange format for everyday bioinformatics web services. Bioinformatics. 26: i540-i546. doi: 10.1093/bioinformatics/btq391
  • Taxt, Arne Michael; Aasland, Rein; Sommerfelt, Halvor; Nataro, James; Puntervoll, Pål. 2010. Heat-stable enterotoxin of enterotoxigenic escherichia coli as a vaccine target. Infection and Immunity. 78: 1824-1831. doi: 10.1128/IAI.01397-09
  • Pocanschi, Cosmin L.; Apell, Hans-Jürgen; Puntervoll, Pål; Høgh, Bente Theting; Jensen, Harald B; Welte, Wolfram; Kleinschmidt, Jörg H. 2006. The major outer membrane protein of Fusobacterium nucleatum (FomA) folds and inserts into lipid bilayers via parallel folding pathways. Journal of Molecular Biology. 355: 548-561. doi: 10.1016/j.jmb.2005.10.060
  • Karlsen, Odd Andre; Kindingstad, Louise; Angelskår, Solveig Mjelstad; Bruseth, Live J.; Straume, Daniel; Puntervoll, Pål; Fjellbirkeland, Anne; Lillehaug, Johan; Jensen, Harald B. 2005. Identification of a copper-repressible cytochrome c peroxidase of Methylococcus capsulatus (Bath); a member of a novel group of the bacterial di-heme cytochrome c peroxidase family of proteins. The FEBS Journal. 272: 6324-6335.
  • Aasland, Rein; Puntervoll, Pål. 2004. Prediksjon av funksjonelle seter i proteiner med ELM. NBS-nytt. 28: 33.
  • Puntervoll, Pål; Aasland, Rein. 2004. Hvordan bruke BLAST til å undersøke sekvenser? NBS-nytt. 28: 19-20.
  • Puntervoll, Pål; Linding, Rune; Gemünd, Christine; Chabanis-Davidson, Sophie; Mattingsdal, Morten; Cameron, Scott; Martin, David M. A.; Auselio, Gabriele; Brannetti, Barbara; Costantini, Anna; Ferrè, Fabrizio; Maselli, Vincenza; Via, Allegra; Cesareni, Gianni; Diella, Francesca; Superti-Furga, Giulio; Wyrwicz, Lucjan; Ramu, Chenna; McGuigan, Caroline; Gudavalli, Rambabu; Letunic, Ivica; Bork, Peer; Aasland, Rein. 2003. ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Research. 31: 3625-3630.
  • Puntervoll, Pål; Ruud, Morten; Bruseth, Live Janicke; Høgh, Bente Theting; Jensen, Harald B. 2002. Structural characterisation of the fusobacterial non-specific porin FomA suggests a 14-stranded topology, unlike the classical porins. Microbiology (Mikrobiologija). 148: 3395-3403.
  • Kleivdal, Hans Torstein; Puntervoll, Pål; Jensen, Harald B. 2001. Topological investigations on the FomA porin from Fusobacterium nucleatum and identification of the constriction loop L6. Microbiology (Mikrobiologija). 147: 1059-1067.
  • Jensen, HB; Skeidsvoll, J.; Fjellbirkeland, Anne; Høgh, Bente Theting; Puntervoll, Pål; Kleivdal, H.; Tommassen, J. 1996. Cloning of the fom A gene encoding the major outer membrane porin of Fusobacterium nucleatum. Microbiol Pathogenesis. 21: 331-342.
Reports and theses
  • Puntervoll, Pål. 2001. Structural studies on the major porin FomA of Fusobacterium nucleatum.
  • Puntervoll, Pål. 1996. Topology of FomA, an outer membrane porin of Fusobacterium nucleatum ATCC 10953. Cand. scient. thesis. [Mangler utgivernavn].
Book sections
  • Subramanian, Sattanathan; Sztromwasser, Pawel Szymon; Petersen, Kjell; Puntervoll, Pål. 2012. Direct data transfer between SOAP web services in orchestration. pages 91-100, pages 91-100. In:
    • Taniar, David. 2012. iiWAS2012: The 14th International Conference on Information Integration and Web. ACM Press. ISBN: 978-1-4503-1306-3.
  • Puntervoll, Pål; Aasland, Rein. 2004. Nomenclatures for protein modules and their cognate motifs. 22, pages 477-487. In:
    • Sudol, Marius. 2004. Modular Protein Domains. Wiley-VCH Verlagsgesellschaft. 524 pages. ISBN: 3-527-30813-X.

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