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Kjell Petersens bilde

Kjell Petersen

Forsker, Gruppeleder CBU Servicegruppe
  • E-postKjell.Petersen@uib.no
  • Telefon+47 55 58 40 37
  • Besøksadresse
    HIB - Thormøhlensgt. 55
  • Postadresse
    Postboks 7803
    5020 Bergen
Tidsskriftartikler
  • Leiss, Lina Wik; Mutlu, Ercan; Øyan, Anne Margrete; Yan, Tao; Tsinkalovsky, Oleg; Sleire, Linda; Petersen, Kjell; Rahman, Mohummad Aminur; Johannessen, Mireille; Mitra, Siddharta S.; Jacobsen, Hege; Talasila, Krishna Mukharji; Miletic, Hrvoje; Jonassen, Inge; Li, Xingang; Brons, Nicolas H.C.; Kalland, Karl-Henning; Wang, Jian; Enger, Per Øyvind. 2017. Tumour-associated glial host cells display a stem-like phenotype with a distinct gene expression profile and promote growth of GBM xenografts. BMC Cancer. 17:108: 1-13. doi: 10.1186/s12885-017-3109-8
  • Martin-Almedina, Silvia; Martinez-Corral, Ines; Holdhus, Rita; Vicente, Andres; Fotiou, Elisavet; Lin, Shin; Petersen, Kjell; Simpson, Michael A.; Hoischen, Alexander; Gilissen, Christian; Jeffery, Heather; Atton, Giles; Karapouliou, Christina; Brice, Glen; Gordon, Kristiana; Wiseman, John W.; Wedin, Marianne; Rockson, Stanley G.; Jeffery, Steve; Mortimer, Peter S.; Snyder, Michael P.; Berland, Siren; Mansour, Sahar; Mäkinen, Taija; Ostergaard, Pia. 2016. EPHB4 kinase-inactivating mutations cause autosomal dominant lymphatic-related hydrops fetalis. Journal of Clinical Investigation. 126: 3080-3088. doi: 10.1172/JCI85794
  • Stokowy, Tomasz; Garbulowski, Mateusz; Fiskerstrand, Torunn; Holdhus, Rita; Labun, Kornel; Sztromwasser, Pawel Szymon; Gilissen, Christian; Hoischen, Alexander; Houge, Gunnar; Petersen, Kjell; Jonassen, Inge; Steen, Vidar Martin. 2016. RareVariantVis: New tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data. Bioinformatics. 32: 3018-3020. doi: 10.1093/bioinformatics/btw359
  • Farag, Yehia Mohamed Mokhtar; Berven, Frode; Jonassen, Inge; Petersen, Kjell; Barsnes, Harald. 2015. Distributed and interactive visual analysis of omics data. Journal of Proteomics. 129: 78-82. doi: 10.1016/j.jprot.2015.05.029
  • Tønne, Elin; Holdhus, Rita; Stansberg, Christine; Stray-Pedersen, Asbjørg; Petersen, Kjell; Brunner, Han G.; Gilissen, Christian; Hoischen, Alexander; Prescon, Trine; Steen, Vidar Martin; Fiskerstrand, Torunn. 2015. Syndromic X-linked intellectual disability segregating with a missense variant in RLIM. European Journal of Human Genetics. 23: 1652-1656. doi: 10.1038/ejhg.2015.30
  • Høivik, Erling Andre; Kusonmano, Kanthida; Halle, Mari Kyllesø; Berg, Anna; Wik, Elisabeth; Werner, Henrica Maria Johanna; Petersen, Kjell; Øyan, Anne Margrete; Kalland, Karl-Henning; Krakstad, Camilla; Trovik, Jone; Widschwendter, Martin; Salvesen, Helga. 2014. Hypomethylation of the CTCFL/BORIS promoter and aberrant expression during endometrial cancer progression suggests a role as an Epi-driver gene. OncoTarget. 5: 1052-1061.
  • Pagarete, António; Kusonmano, Kanthida; Petersen, Kjell; Kimmance, Susan A.; Martínez Martínez, Joaquin; Wilson, William H.; Hehemann, Jan-Hendrik; Allen, Michael J.; Sandaa, Ruth-Anne. 2014. Dip in the gene pool: Metagenomic survey of natural coccolithovirus communities. Virology. 466-467: 129-137. doi: 10.1016/j.virol.2014.05.020
  • Tangen, Ingvild Løberg; Krakstad, Camilla; Halle, Mari Kyllesø; Werner, Henrica Maria Johanna; Øyan, Anne Margrete; Kusonmano, Kanthida; Petersen, Kjell; Kalland, Karl-Henning; Akslen, Lars A.; Trovik, Jone; Rodriguez, Antoni Hurtado; Salvesen, Helga Birgitte. 2014. Switch in FOXA1 status associates with endometrial cancer progression. PLoS ONE. 9. doi: 10.1371/journal.pone.0098069
  • Wik, Elisabeth; Trovik, Jone; Kusonmano, Kanthida; Birkeland, Even; Ræder, Maria B; Pashtan, I; Høivik, Erling Andre; Krakstad, Camilla; Werner, Henrica Maria Johanna; Holst, Frederik; Mjøs, Siv; Halle, Mari Kyllesø; Mannelqvist, Monica; Mauland, Karen Klepsland; Øyan, Anne Margrete; Stefansson, Ingunn; Petersen, Kjell; Simon, R; Cherniack, AD; Meyerson, M; Kalland, Karl-Henning; Akslen, Lars A.; Salvesen, Helga Birgitte. 2014. Endometrial Carcinoma Recurrence Score (ECARS) validates to identify aggressive disease and associates with markers of epithelial-mesenchymal transition and PI3K alterations. Gynecologic Oncology. 134: 599-606. doi: 10.1016/j.ygyno.2014.06.026
  • Petersen, Kjell; Rajcevic, Uros; Rahim, Siti Aminah Abdul; Jonassen, Inge; Kalland, Karl-Henning; Jimenez, Connie R.; Bjerkvig, Rolf; Niclou, Simone P. 2013. Gene set based integrated data analysis reveals phenotypic differences in a brain cancer model. PLoS ONE. 8. 11 sider. doi: 10.1371/journal.pone.0068288
  • Seehuus, Siri-Christine; Taylor, Simon; Petersen, Kjell; Aamodt, Randi. 2013. Somatic maintenance resources in the honeybee worker fat body are distributed to withstand the most life-threatening challenges at each life stage. PLoS ONE. 8. doi: 10.1371/journal.pone.0069870
  • Subramanian, Sattanathan; Sztromwasser, Pawel Szymon; Puntervoll, Pål; Petersen, Kjell. 2013. Pipelined data-flow delegated orchestration for data-intensive eScience workflows. International Journal of Web Information Systems. 9: 204-218. doi: 10.1108/IJWIS-05-2013-0012
  • Tysnes, Berit Bølge; Sætran, Hege Aase; Mørk, Sverre; Margaryan, Naira v.; Eide, Geir Egil; Petersen, Kjell; Strizzi, Luigi; Hendrix, J. C. 2013. Age-dependent association between protein expression of the embryonic stem cell marker Cripto-1 and survival of glioblastoma patients. Translational Oncology. 6: 732-741. doi: 10.1593/tlo.13427
  • Werner, Henrica Maria Johanna; Berg, Anna; Wik, Elisabeth; Birkeland, Even; Krakstad, Camilla; Kusonmano, Kanthida; Petersen, Kjell; Kalland, Karl-Henning; Øyan, Anne Margrete; Akslen, Lars A.; Trovik, Jone; Salvesen, Helga Birgitte. 2013. ARID1A loss is prevalent in endometrial hyperplasia with atypia and low-grade endometrioid carcinomas. Modern Pathology. 26: 428-434. doi: 10.1038/modpathol.2012.174
  • Wik, Elisabeth; Birkeland, Even; Trovik, Jone; Werner, Henrica Maria Johanna; Høivik, Erling Andre; Mjøs, Siv; Krakstad, Camilla; Kusonmano, Kanthida; Mauland, Karen Klepsland; Stefansson, Ingunn Marie; Holst, Frederik; Petersen, Kjell; Øyan, Anne Margrete; Simon, Roland; Kalland, Karl-Henning; Ricketts, William; Akslen, Lars A.; Salvesen, Helga Birgitte. 2013. High phospho-stathmin(Serine38) expression identifies aggressive endometrial cancer and suggests an association with PI3K inhibition. Clinical Cancer Research. 19: 2331-2341. doi: 10.1158/1078-0432.CCR-12-3413
  • Birkeland, Even; Wik, Elisabeth; Mjøs, Siv; Høivik, Erling Andre; Trovik, Jone; Werner, Henrica Maria Johanna; Kusonmano, Kanthida; Petersen, Kjell; Ræder, Maria B; Holst, Frederik; Øyan, Anne Margrete; Kalland, Karl-Henning; Akslen, Lars A.; Simon, R; Krakstad, Camilla; Salvesen, Helga Birgitte. 2012. KRAS gene amplification and overexpression but not mutation associates with aggressive and metastatic endometrial cancer. British Journal of Cancer. 107: 1997-2004. doi: 10.1038/bjc.2012.477
  • Krakstad, Camilla; Birkeland, Even; Seidel, Danila; Kusonmano, Kanthida; Petersen, Kjell; Mjøs, Siv; Høivik, Erling Andre; Wik, Elisabeth; Halle, Mari Kyllesø; Øyan, Anne Margrete; Kalland, Karl-Henning; Werner, Henrica Maria Johanna; Trovik, Jone; Salvesen, Helga Birgitte. 2012. High-throughput mutation profiling of primary and metastatic endometrial cancers identifies KRAS, FGFR2 and PIK3CA to be frequently mutated. PLoS ONE. 7. doi: 10.1371/journal.pone.0052795
  • Reikvam, Håkon; Hatfield, Kimberley Joanne; Ersvær, Elisabeth; Hovland, Randi; Skavland, Jørn; Gjertsen, Bjørn Tore; Petersen, Kjell; Bruserud, Øystein. 2012. Expression profile of heat shock proteins in acute myeloid leukaemia patients reveals a distinct signature strongly associated with FLT3 mutation status - consequences and potentials for pharmacological intervention. British Journal of Haematology. 156: 468-480. doi: 10.1111/j.1365-2141.2011.08960.x
  • Apelseth, Torunn Oveland; Hervig, Tor; Wentzel-Larsen, Tore; Petersen, Kjell; Reikvam, Håkon; Bruserud, Øystein. 2011. A prospective observational study of the effect of platelet transfusions on levels of platelet-derived cytokines, chemokines and interleukins in acute leukaemia patients with severe chemotherapy-induced cytopenia. European Cytokine Network. 22: 52-62. doi: 10.1684/ecn.2011.0271
  • Sissener, Nini; Hemre, Gro Ingunn; Lall, Santosh P.; Sagstad, Anita; Petersen, Kjell; Williams, J; Rohloff, Jens; Sanden, Monica. 2011. Are apparent negative effects of feeding GM MON810 maize to Atlantic salmon, Salmo salar, caused by confounding factors? British Journal of Nutrition. 106: 42-56. doi: 10.1017/S0007114510005726
  • Sztromwasser, Pawel Szymon; Puntervoll, Pål; Petersen, Kjell. 2011. Data partitioning enables the use of standard SOAP Web Services in genome-scale workflows. Journal of Integrated Bioinformatics (JIB). 20 sider. doi: 10.2390/biecoll-jib-2011-163
  • Søfteland, Liv Ingeborg Rosvoll; Petersen, Kjell; Stavrum, Anne-Kristin; Wu, T; Olsvik, Pål Asgeir. 2011. Hepatic in vitro toxicity assessment of PBDE congeners BDE47, BDE153 and BDE154 in Atlantic salmon (Salmo salar L.). Aquatic Toxicology. 105: 246-263. doi: 10.1016/j.aquatox.2011.03.012
  • Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne; Hovig, Eivind; Jonassen, Inge. 2010. The FUGE Bioinformatics platform: a central platform in the FUGE2 period. MITAT. Minimally invasive therapy & allied technologies. 19: 70-71. doi: 10.3109/13645706.2010.500867
  • Johannessen, Tor-Christian Aase; Wang, Jian; Skaftnesmo, Kai Ove; Sakariassen, Per Øystein; Enger, Per Øyvind; Petersen, Kjell; Øyan, Anne Margrete; Kalland, Karl-Henning; Bjerkvig, Rolf; Tysnes, Berit Bølge. 2009. Highly infiltrative brain tumours show reduced chemosensitivity associated with a stem cell-like phenotype. Neuropathology and Applied Neurobiology. 35: 380-393. doi: 10.1111/j.1365-2990.2009.01008.x
  • Johannessen, Tor-Christian Aase; Wang, Jian; Skaftnesmo, Kai Ove; Sakariassen, Per Øystein; Enger, Per Øyvind; Petersen, Kjell; Øyan, Anne Margrete; Kalland, Karl-Henning; Bjerkvig, Rolf; Tysnes, Berit Bølge. 2009. Highly infiltrative brain tumours show reduced chemosensitivity associated with a stem cell-like phenotype. Neuropathology and Applied Neurobiology. 35: 380-393. doi: 10.1111/j.1365-2990.2009.01008.x
  • Ke, Xisong; Qu, Yi; Rostad, Kari; Li, Wen-Cheng; Lin, Biaoyang; Halvorsen, Ole Johan; Haukaas, Svein Andreas; Jonassen, Inge; Petersen, Kjell; Goldfinger, Naomi; Rotter, Varda; Akslen, Lars A.; Øyan, Anne Margrete; Kalland, Karl-Henning. 2009. Genome-wide profiling of histone H3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis. PLoS ONE. 4. 14 sider. doi: 10.1371/journal.pone0004687
  • Rajcevic, Uros; Petersen, Kjell; Knol, Jaco C; Loos, Maarten; Bougnaud, Sébastien; Klychnikov, Oleg; Li, Kan Wa; Pham, Thang V; Wang, Jian; Miletic, Hrvoje; Peng, Zhao; Bjerkvig, Rolf; Jimenez, Connie R; Niclou, Simone P. 2009. iTRAQ-based proteomics profiling reveals increased metabolic activity and cellular cross-talk in angiogenic compared with invasive glioblastoma phenotype. Molecular & Cellular Proteomics. 8: 2595-2612. doi: 10.1074/mcp.M900124-MCP200
  • Trösse, Christiane; Waagbø, Rune; Breck, Olav; Stavrum, Anne-Kristin; Petersen, Kjell; Olsvik, Pål A. 2009. Genome-wide transcription analysis of histidine-related cataract in Atlantic salmon (Salmo salar L). Molecular Vision. 15: 1332-1350.
  • Olsvik, Pål A.; Lie, Kai K; Mykkeltvedt, Eva; Samuelsen, Ole B.; Petersen, Kjell; Stavrum, Anne-Kristin; Lunestad, Bjørn Tore. 2008. A laboratory study to evaluate the use of emamectin benzoate in the control of sea lice in sea-ranched Atlantic salmon (Salmo salar L.). BMC Pharmacology. 285: 2-7. Publisert 2008-09-11. doi: 10.1016/j.aquaculture.2008.07.055
  • Hjelmervik, Trond Ove R.; Lindqvist, Anna-Karin B.; Petersen, Kjell; Johannesson, Martina; Stavrum, Anne-Kristin; Johansson, Åsa; Jonsson, Roland; Holmdahl, Rikard; Bolstad, Anne Isine. 2007. The influence of the NOD Nss1/Idd5 loci on sialadenitis and gene expression in salivary glands of congenic mice. Arthritis Research & Therapy. 9: 1-15. doi: 10.1186/ar2300
  • Petersen, Kjell; Øyan, Anne Margrete; Rostad, Kari; Olsen, Sue; Bø, Trond Hellem; Salvesen, Helga; Gjertsen, Bjørn Tore; Bruserud, Øystein; Halvorsen, Ole Johan; Akslen, Lars A.; Steen, Vidar Martin; Jonassen, Inge; Kalland, Karl-Henning. 2007. Comparison of nucleic acid targets prepared from total RNA or poly(A) RNA for DNA oligonucleotide microarray hybridization. Analytical Biochemistry. 366: 46-58. doi: 10.1016/j.ab.2007.03.013
  • Stansberg, Christine; Vik-Mo, Audun Osland; Holdhus, Rita; Breilid, Harald; Srebro, Boleslaw; Petersen, Kjell; Jørgensen, Hugo Arild; Jonassen, Inge; Steen, Vidar Martin. 2007. Gene expression profiles in rat brain disclose CNS signature genes and regional patterns of functional specialisation. BMC Genomics. 8. doi: 10.1186/1471-2164-8-94
  • Stuhr, Linda Elin Birkhaug; Raa, Anette Bjaaland; Øyan, Anne Margrete; Kalland, Karl-Henning; Sakariassen, Per Øystein; Petersen, Kjell; Bjerkvig, Rolf; Reed, Rolf Kåre. 2007. Hyperoxia retards growth and induces apoptosis, changes in vascular density and gene expression in transplanted gliomas in nude rats. Journal of Neuro-Oncology. 85: 191-202. doi: 10.1007/s11060-007-9407-2
  • Sakariassen, Per Øystein; Prestegarden, Lars; Wang, Jian; Skaftnesmo, Kai Ove; Mahesparan, Rupavathana; Molthoff, Carla; Sminia, Peter; Sundlisæter, Eirik; Misra, Anjan; Tysnes, Berit Bølge; Chekenya, Martha; Peters, Hans; Lende, Gabriel; Kalland, Karl-Henning; Øyan, Anne Margrete; Petersen, Kjell; Jonassen, Inge; van der Kogel, Albert; Feuerstein, Burt G.; Terzis, A. Jorge A.; Bjerkvig, Rolf; Enger, Per Øyvind. 2006. Angiogenesis-independent tumor growth mediated by stem-like cancer cells. Proceedings of the National Academy of Sciences of the United States of America. 103: 16466-16471. doi: 10.1073/pnas.0607668103
  • Hjelmervik, Trond Ove; Petersen, Kjell; Jonassen, Inge; Jonsson, Roland; Bolstad, Anne Isine. 2005. Gene expression profiling of minor salivary glands clearly distinguishes primary Sjögren's syndrome patients from healthy control subjects. Arthritis and Rheumatism. 52: 1534-1544. doi: 10.1002/art.21006
  • Hjelmervik, Trond Ove; Petersen, Kjell; Jonassen, Inge; Jonsson, Roland; Bolstad, Anne Isine. 2004. Gene expression profiling of minor salivary glands in primary Sjögren's syndrome clearly groups patients and healthy control indiviluals. Arthritis and Rheumatism. 50: S577-S577.
Rapporter/avhandlinger
  • Petersen, Kjell. 2002. Zinc finger protein structure modelling using GADGET Genetic Algoriithm and Distance Geometry for Exploring Topology.
  • Petersen, Kjell. 1997. Structure prediction of the zinc-finger protein family by the use of a parallel genetic algorithm. cand.scient.-oppgave. [Mangler utgivernavn]. 126 sider.
Bokkapitler
  • Subramanian, Sattanathan; Sztromwasser, Pawel Szymon; Petersen, Kjell; Puntervoll, Pål. 2012. Direct data transfer between SOAP web services in orchestration. pages 91-100, sider 91-100. I:
    • Taniar, David. 2012. iiWAS2012: The 14th International Conference on Information Integration and Web. ACM Publications. ISBN: 978-1-4503-1306-3.

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