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The Department of Biomedicine

BBB Seminar: Gunnar von Heijne

Insertion of membrane proteins into the endoplasmic reticulum

Biokjemisk Kollokvium (NBS, Bergen Division)

Gunnar von Heijne, Center for Biomembrane Research, Department of Biochemistry and Biophysics, Stockholm University, Sweden

Despite their impressive structural and functional diversity, most membrane proteins share a common mechanism of membrane insertion. The Sec61 translocon in the ER (and its bacterial homologue, the SecYEG translocon) not only channels secreted proteins across the membrane, but also mediates the co-translational insertion of transmembrane proteins into the lipid bilayer. Even though an X-ray structure of an archaeal Sec61 complex is known, the actual process whereby incipient transmembrane a-helices in a nascent polypeptide are recognized by the translocon and shunted into the lipid bilayer remains a mystery.

We have attacked this problem using a ‘substrate engineering’ approach, in which we challenge the Sec61 translocon with systematically designed potential transmembrane helices built on a very simple Ala-Leu framework. Analysis of a large panel of such designed segments has made it possible to derive a matrix that describes the position-specific contribution of each of the 20 amino acids to the overall free energy of insertion of a transmembrane helix. This experimentally derived matrix is surprisingly similar to the matrix of statistical free energy contributions that one can calculate from the position-specific frequencies of the different amino acids in the known high-resolution membrane protein structures. To a first approximation, the ‘molecular code’ for transmembrane-helix recognition by the Sec61 translocon appears to be surprisingly simple, suggesting that the translocon allows the nascent polypeptide chain to sample the surrounding bilayer as it passes through the translocation channel.

Selected publications:

Hessa, T., Kim., H., Bihlmaier, K., Lundin, C., Boekel, J., Andersson, H., Nilsson, I.M., White, S.H., and von Heijne, G. (2005) Recognition of transmembrane helices by the endoplasmic reticulum translocon. Nature 433, 377-381.

Hessa, T., Meindl-Beinker, N.M., Bernsel, A., Kim, H., Sato, Y., Lerch-Bader, M., Nilsson, I.M., White, S.H., and von Heijne, G. (2007) Molecular code for transmembrane-helix recognition by the Sec61 translocon. Nature 450, 1026-1030.

Lerch-Bader, M., Lundin, C., Kim, H., Nilsson, I.M., and von Heijne, G. (2008) Contribution of positively charged flanking residues to the insertion of transmembrane helices into the endoplasmic reticulum. Proc.Natl.Acad.Sci. USA 105, 4127-4132.

Bernsel, A., Viklund, H., Falk, J., Lindahl, E., von Heijne, G., and Elofsson, A. (2008) Prediction of membrane-protein topology from first principles. Proc.Natl.Acad.Sci. USA 105, 7177-7181.

Lundin, C., Kim, H., Nilsson, I.M., White, S.H.,and von Heijne, G. (2008) The molecular code for protein insertion in the ER membrane is similar for Nin-Cout and Nout-Cin transmembrane helices. Proc.Natl.Acad.Sci. USA 105, 15702-15707.

Hessa, T., Reithinger, J.H., von Heijne, G., and Kim, H. (2009) Quantitative analysis of transmembrane helix integration in the endoplasmic reticulum in S. cerevisiae. J.Mol.Biol. 386, 1222-1228.

 

Host: Ian F. Pryme, Department of Biomedicine