• E-mailEivind.Valen@uib.no
  • Phone+47 55 58 40 74+47 458 05 360
  • Visitor Address
    HIB - Thormøhlensgt. 55
  • Postal Address
    Postboks 7803
    5020 Bergen
Journal articles
  • Danks, Gemma Barbara; Galbiati, Heloisa; Raasholm, Martina; Torres Cleuren, Yamila Nicole; Valen, Eivind; Navratilova, Pavla; Thompson, Eric. 2019. Trans-splicing of mRNAs links gene transcription to translational control regulated by mTOR. BMC Genomics. 20. doi: doi:10.1186/s12864-019-6277-x
  • Krause, Maximilian; Niazi, Adnan Muhammad; Labun, Kornel; Torres Cleuren, Yamila Nicole; Müller, Florian S; Valen, Eivind. 2019. TailFindR: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing. RNA: A publication of the RNA Society. 25: 1229-1241. doi: 10.1261/rna.071332.119
  • Labun, Kornel; Guo, Xiaoge; Chavez, Alejandro; Church, George M.; Gagnon, James A.; Valen, Eivind. 2019. Accurate analysis of genuine CRISPR editing events with ampliCan. Genome Research. 29: 843-847. doi: 10.1101/gr.244293.118
  • Labun, Kornel; Montague, Tessa G.; Krause, Maximilian; Torres Cleuren, Yamila Nicole; Tjeldnes, Håkon; Valen, Eivind. 2019. CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing. Nucleic Acids Research. 47: W171-W174. doi: 10.1093/nar/gkz365
  • Birkeland, Åsmund; Chyzynska, Katarzyna; Valen, Eivind. 2018. Shoelaces: An interactive tool for ribosome profiling processing and visualization. BMC Genomics. 19. 6 pages. doi: 10.1186/s12864-018-4912-6
  • Giess, Adam; Jonckheere, Veronique; Ndah, Elvis; Chyzynska, Katarzyna; Van Damme, Petra; Valen, Eivind. 2017. Ribosome signatures aid bacterial translation initiation site identification. BMC Biology. 15:76: 1-14. doi: 10.1186/s12915-017-0416-0
  • Ndah, Elvis; Jonckheere, Veronique; Giess, Adam; Valen, Eivind; Menschaert, Gerben; Van Damme, Petra. 2017. REPARATION: ribosome profiling assisted (re-) annotation of bacterial genomes. Nucleic Acids Research. 45. doi: 10.1093/nar/gkx758
  • Thyme, Summer B.; Akhmetova, Laila; Montague, Tessa G.; Valen, Eivind; Schier, Alexander F. 2016. Internal guide RNA interactions interfere with Cas9-mediated cleavage. Nature Communications. 7:11750. doi: 10.1038/ncomms11750
  • Valen, Eivind; Labun, Kornel; Montague, Tessa G.; Gagnon, James A.; Thyme, Summer B. 2016. CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering. Nucleic Acids Research. 44. doi: 10.1093/nar/gkw398
  • Merkle, Florian T.; Neuhausser, Werner M.; Santos, David; Valen, Eivind; Gagnon, James A.; Maas, Kristi; Sandoe, Jackson; Schier, Alexander F.; Eggan, Kevin. 2015. Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus. Cell reports. 11: 875-883. doi: 10.1016/j.celrep.2015.04.007
  • Andersson, Robin; Refsing Andersen, Peter; Valen, Eivind; Core, Leighton J.; Bornholdt, Jette; Boyd, Mette; Heick Jensen, Torben; Sandelin, Albin. 2014. Nuclear stability and transcriptional directionality separate functionally distinct RNA species. Nature Communications. 5:5336. doi: 10.1038/ncomms6336

More information in national current research information system (CRIStin)

The mystery of pervasive translation

CRISPR genome engineering

Discovering novel micropeptides

The function of long non-coding RNAs