Home
Harald Barsnes's picture
  • E-mailHarald.Barsnes@uib.no
  • Phone+47 55 58 66 65
  • Visitor Address
    Jonas Lies vei 91
  • Postal Address
    Postboks 7804
    5020 Bergen

Harald Barsnes is a group leader at both the Proteomics Unit (PROBE) at the Department of Biomedicine and at the Computational Biology Unit (CBU) at the Department of Informatics.

The main focus of the group is the development of user-friendly open source bioinformatics tools that enable and empower researchers to analyze and share their own data. For more information about the group see www.cbu.uib.no/barsnes.

Barsnes obtained his PhD from the Department of Informatics at the University of Bergen in 2010, with a focus on bioinformatics and proteomics. Since then he worked at the Proteomics Unit at the Department of Biomedicine, first as a senior engineer and later as a Postdoc funded by the Research Council of Norway. He then worked as a researcher at the Department of Clinical Science as part of the Ræder lab, until starting his own research group in 2016 funded by the Bergen Research Foundation and the Research Council of Norway.

The research has resulted in numerous publications and a long list of freely available software, including PeptideShakerSearchGUI and PRIDE Converter.

Barsnes has also been a guest editor in PROTEOMICS and has co-authored a Wiley text book called Computational and Statistical Methods for Protein Quantification by Mass Spectrometry.

In 2015 he received the prestigious Meltzer Award for Excellent Young Researchers at the University of Bergen, and in 2016 he was awarded a recruitment fellowship from the Bergen Research Foundation.

Books
  • Eidhammer, Ingvar; Barsnes, Harald; Eide, Geir Egil; Martens, Lennart. 2013. Computational and Statistical Methods for Protein Quantification by Mass Spectrometry. John Wiley & Sons. 334 pages. ISBN: 978-1-119-96400-1.
Journal articles
  • Binz, Pierre-Alain; Shofstahl, Jim; Vizcaino, Juan Antonio; Barsnes, Harald; Chalkley, Robert J.; Menschaert, Gerben; Alpi, Emanuele; Clauser, Karl; Eng, Jimmy K.; Lane, Lydie; Seymour, Sean L.; Hernández Sánchez, Luis Francisco; Mayer, Gerhard; Eisenacher, Martin; Perez-Riverol, Yasset; Kapp, Eugene A.; Mendoza, Luis; Baker, Peter R.; Collins, Andrew; Van Den Bossche, Tim; Deutsch, Eric W. 2019. Proteomics Standards Initiative Extended FASTA Format. Journal of Proteome Research. 18: 2686-2692. doi: 10.1021/acs.jproteome.9b00064
  • Burger, Bram; Lereim, Ragnhild Reehorst; Berven, Frode; Barsnes, Harald. 2019. Detecting single amino acids and small peptides by combining isobaric tags and peptidomics. European Journal of Mass Spectrometry. doi: 10.1177/1469066719857006
  • Guldbrandsen, Astrid; Farag, Yehia Mohamed Mokhtar; Lereim, Ragnhild Reehorst; Berven, Frode; Barsnes, Harald. 2019. Essential Features and Use Cases of the Cerebrospinal Fluid Proteome Resource (CSF-PR). Methods in molecular biology. 2044: 377-391. doi: 10.1007/978-1-4939-9706-0_25
  • Hernández Sánchez, Luis Francisco; Burger, Bram; Horro Marcos, Carlos; Fabregat, Antonio; Johansson, Stefan; Njølstad, Pål Rasmus; Barsnes, Harald; Hermjakob, Henning; Vaudel, Marc. 2019. PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping. GigaScience. 8: 1-13. doi: 10.1093/gigascience/giz088
  • Barsnes, Harald; Vaudel, Marc. 2018. SearchGUI: a highly adaptable common interface for proteomics search and de novo engines. Journal of Proteome Research. 17: 2552-2555. doi: 10.1021/acs.jproteome.8b00175
  • Burger, Bram; Hernández Sánchez, Luis Francisco; Lereim, Ragnhild Reehorst; Barsnes, Harald; Vaudel, Marc. 2018. Analyzing the Structure of Pathways and Its Influence on the Interpretation of Biomedical Proteomics Data Sets. Journal of Proteome Research. 17: 3801-3809. doi: 10.1021/acs.jproteome.8b00464
  • Chambers, Matthew C.; Jagtap, Pratik D.; Johnson, James E.; McGowan, Thomas; Kumar, Praveen; Onsongo, Getiria; Guerrero, Candace R.; Barsnes, Harald; Vaudel, Marc; Martens, Lennart; Grüning, Björn; Cooke, Ira R.; Heydarian, Mohammad; Reddy, Karen L.; Griffin, Timothy J. 2017. An accessible proteogenomics informatics resource for cancer researchers. Cancer Research. 77: e43-e46. doi: 10.1158/0008-5472.CAN-17-0331
  • Kopczynski, Dominik; Barsnes, Harald; Njølstad, Pål Rasmus; Sickmann, Albert; Vaudel, Marc; Ahrends, Robert. 2017. PeptideMapper: Efficient and versatile amino acid sequence and tag mapping. Bioinformatics. 33: 2042-2044. doi: 10.1093/bioinformatics/btx122
  • Kroksveen, Ann Cathrine; Guldbrandsen, Astrid; Vaudel, Marc; Lereim, Ragnhild Reehorst; Barsnes, Harald; Myhr, Kjell-Morten; Torkildsen, Øivind; Berven, Frode. 2017. In-depth cerebrospinal fluid quantitative proteome and deglycoproteome analysis: presenting a comprehensive picture of pathways and processes affected by multiple sclerosis. Journal of Proteome Research. 16: 179-194. doi: 10.1021/acs.jproteome.6b00659
  • Leprevost, Felipe da Veiga; Grüning, Björn A.; Alves Aflitos, Saulo; Röst, Hannes L.; Uszkoreit, Julian; Barsnes, Harald; Vaudel, Marc; Moreno, Pablo; Gatto, Laurent; Weber, Jonas; Bai, Mingze; Jimenez, Rafael C.; Sachsenberg, Timo; Pfeuffer, Julianus; Vera Alvarez, Roberto; Griss, Johannes; Nesvizhskii, Alexey I.; Perez-Riverol, Yasset. 2017. BioContainers: An open-source and community-driven framework for software standardization. Bioinformatics. doi: 10.1093/bioinformatics/btx192
  • Perez-Riverol, Yasset; Ternent, Tobias; Koch, Maximilian; Barsnes, Harald; Vrousgou, Olga; Jupp, Simon; Vizcaíno, Juan Antonio. 2017. OLS Client and OLS Dialog: Open source tools to annotate public omics datasets. Proteomics. 17. doi: 10.1002/pmic.201700244
  • Verheggen, Kenneth; Ræder, Helge; Berven, Frode; Martens, Lennart Martens; Barsnes, Harald; Vaudel, Marc. 2017. Anatomy and evolution of database search engines—a central component of mass spectrometry based proteomic workflows. Mass spectrometry reviews (Print). doi: 10.1002/mas.21543
  • Vizcaíno, Juan Antonio; Mayer, Gerhard; Perkins, Simon; Barsnes, Harald; Vaudel, Marc; Perez-Riverol, Yasset; Ternent, Tobias; Uszkoreit, Julian; Eisenacher, Martin; Fischer, Lutz; Rappsilber, Juri; Netza, Eugen; Walzer, Mathias; Kohlbacher, Oliver; Leitner, Alexander; Chalkley, Robert J.; Ghali, Fawaz; Martínez-Bartolomé, Salvador; Deutsch, Eric W.; Jones, Andrew R. 2017. The mzIdentML data standard version 1.2, supporting advances in proteome informatics. Molecular & Cellular Proteomics. 16: 1275-1285. doi: 10.1074/mcp.M117.068429
  • Guldbrandsen, Astrid; Farag, Yehia Mohamed Mokhtar; Kroksveen, Ann Cathrine; Oveland, Eystein; Lereim, Ragnhild Reehorst; Opsahl, Jill Anette; Myhr, Kjell-Morten; Berven, Frode; Barsnes, Harald. 2016. CSF-PR 2.0: an interactive literature guide to quantitative cerebrospinal fluid mass spectrometry data from neurodegenerative disorders. Molecular & Cellular Proteomics. 16: 300-309. doi: 10.1074/mcp.O116.064477
  • Hernandez Sanchez, Luis Francisco; Aasebø, Elise; Selheim, Frode; Berven, Frode; Ræder, Helge; Barsnes, Harald; Vaudel, Marc. 2016. Systemic Analysis of Regulated Functional Networks. Methods in molecular biology. 1394: 287-310. doi: 10.1007/978-1-4939-3341-9_21
  • Opsahl, Jill Anette; Vaudel, Marc; Guldbrandsen, Astrid; Aasebø, Elise; Van Pesch, Vincent; Franciotta, Diego; Myhr, Kjell-Morten; Barsnes, Harald; Berle, Magnus Foldal; Torkildsen, Øivind; Kroksveen, Ann Cathrine; Berven, Frode. 2016. Label-free analysis of human cerebrospinal fluid addressing various normalization strategies and revealing protein groups affected by multiple sclerosis. Proteomics. 16: 1154-1165. doi: 10.1002/pmic.201500284
  • Vaudel, Marc; Barsnes, Harald; Bjerkvig, Rolf; Bikfalvi, Andreas; Selheim, Frode; Berven, Frode; Daubon, Thomas. 2016. Practical considerations for omics experiments in biomedical sciences. Current Pharmaceutical Biotechnology. 17: 105-114. doi: 10.2174/1389201016666150817095348
  • Vaudel, Marc; Barsnes, Harald; Ræder, Helge; Berven, Frode. 2016. Using Proteomics Bioinformatics Tools and Resources in Proteogenomic Studies. Advances in Experimental Medicine and Biology. 926: 65-75. doi: 10.1007/978-3-319-42316-6_5
  • Vaudel, Marc; Verheggen, Kenneth; Csordas, Attila; Ræder, Helge; Berven, Frode; Martens, Lennart; Vizcaíno, Juan Antonio; Barsnes, Harald. 2016. Exploring the potential of public proteomics data. Proteomics. 16: 214-225. doi: 10.1002/pmic.201500295
  • Verheggen, Kenneth; Maddelein, Davy; Hulstaert, Niels; Martens, Lennart; Barsnes, Harald; Vaudel, Marc. 2016. Pladipus enables universal distributed computing in proteomics bioinformatics. Journal of Proteome Research. 15: 707-712. doi: 10.1021/acs.jproteome.5b00850
  • Yllmaz, Sule; Victor, Björn; Hulstaert, Niels; Vandermarliere, Elien; Barsnes, Harald; Degroeve, Sven; Gupta, Surya; Sticker, Adriaan; Gabriel, Sarah; Dorny, Pierre; Palmblad, Magnus; Martens, Lennart. 2016. A pipeline for differential proteomics in unsequenced species. Journal of Proteome Research. 15: 1963-1970. doi: 10.1021/acs.jproteome.6b00140
  • Barsnes, Harald; Vaudel, Marc; Martens, Lennart. 2015. JSparklines: Making tabular proteomics data come alive. Proteomics. 15: 1428-1431. doi: 10.1002/pmic.201400356
  • Farag, Yehia Mohamed Mokhtar; Berven, Frode; Jonassen, Inge; Petersen, Kjell; Barsnes, Harald. 2015. Distributed and interactive visual analysis of omics data. Journal of Proteomics. 129: 78-82. doi: 10.1016/j.jprot.2015.05.029
  • Kroksveen, Ann Cathrine; Jaffe, Jacob D.; Aasebø, Elise; Barsnes, Harald; Bjørlykke, Yngvild; Franciotta, Diego; Keshishian, Hasmik; Myhr, Kjell-Morten; Opsahl, Jill Anette; van Pesch, Vincent; Teunissen, Charlotte E.; Torkildsen, Øivind; Ulvik, Rune Johan; Vethne, Heidrun; Carr, Steven A.; Berven, Frode. 2015. Quantitative proteomics suggests decrease in the secretogranin-1 cerebrospinal fluid levels during the disease course of multiple sclerosis. Proteomics. 15: 3361-3369. doi: 10.1002/pmic.201400142
  • Oveland, Eystein; Muth, Thilo; Rapp, Erdmann; Martens, Lennart; Berven, Frode; Barsnes, Harald. 2015. Viewing the proteome: How to visualize proteomics data? Proteomics. 15: 1341-1355. doi: 10.1002/pmic.201400412
  • Vaudel, Marc; Burkhart, Julia M.; Zahedi, René P.; Oveland, Eystein; Berven, Frode; Sickmann, Albert; Martens, Lennart; Barsnes, Harald. 2015. PeptideShaker enables reanalysis of MS-derived proteomics data sets. Nature Biotechnology. 33: 22-24. doi: 10.1038/nbt.3109
  • Bjørlykke, Yngvild; Vethne, Heidrun; Vaudel, Marc; Barsnes, Harald; Berven, Frode; Tjora, Erling; Ræder, Helge. 2014. Carboxyl-ester lipase maturity-onset diabetes of the young disease protein biomarkers in secretin-stimulated duodenal juice. Journal of Proteome Research. 14: 521-530. doi: 10.1021/pr500750z
  • Guldbrandsen, Astrid; Vethne, Heidrun; Farag, Yehia Mohamed Mokhtar; Oveland, Eystein; Garberg, Hilde Kristin; Berle, Magnus Foldal; Myhr, Kjell-Morten; Opsahl, Jill Anette; Barsnes, Harald; Berven, Frode. 2014. In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR). Molecular & Cellular Proteomics. 13: 3152-3163. doi: 10.1074/mcp.M114.038554
  • Kelchtermans, Pieter; Bittremieux, Wout; De Grave, Kurt; Degroeve, S; Ramon, Jan; Laukens, Kris; Valkenborg, Dirk; Barsnes, Harald; Martens, Lennart. 2014. Machine learning applications in proteomics research: How the past can boost the future. Proteomics. 14: 353-366. doi: 10.1002/pmic.201300289
  • Muth, Thilo; Weilnböck, Lisa; Rapp, Erdmann; Huber, Christian G.; Martens, Lennart; Vaudel, Marc; Barsnes, Harald. 2014. DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra. Journal of Proteome Research. 13: 1143-1146. doi: 10.1021/pr4008078
  • Vaudel, Marc; Venne, A. Saskia; Berven, Frode; Zahedi, René P.; Martens, Lennart; Barsnes, Harald. 2014. Shedding light on black boxes in protein identification. Proteomics. 14: 1001-1005. doi: 10.1002/pmic.201300488
  • Verheggen, Kenneth; Barsnes, Harald; Martens, Lennart. 2014. Distributed computing and data storage in proteomics: many hands make light work, and a stronger memory. Proteomics. 14: 367-377. doi: 10.1002/pmic.201300288
  • Barsnes, Harald; Martens, Lennart. 2013. Crowdsourcing in proteomics: public resources lead to better experiments. Amino Acids. 44: 1129-1137. doi: 10.1007/s00726-012-1455-z
  • Hulstaert, Niels; Reisinger, Florian; Rameseder, Jonathan; Barsnes, Harald; Vizcaíno, Juan Antonio; Martens, Lennart. 2013. Pride-asap: automatic fragment ion annotation of identified PRIDE spectra. Journal of Proteomics. 95: 89-92. doi: 10.1016/j.jprot.2013.04.011
  • Kroksveen, Ann Cathrine; Aasebø, Elise; Vethe, Heidrun; van Pesch, Vincent; Franciotta, Diego; Teunissen, Charlotte E.; Ulvik, Rune Johan; Vedeler, Christian A.; Myhr, Kjell-Morten; Barsnes, Harald; Berven, Frode. 2013. Discovery and initial verification of differentially abundant proteins between multiple sclerosis patients and controls using iTRAQ and SID-SRM. Journal of Proteomics. 78: 312-325. doi: 10.1016/j.jprot.2012.09.037
  • Aye, Thin Thin; Low, Teck Yew; Bjørlykke, Yngvild; Barsnes, Harald; Heck, Albert J.R.; Berven, Frode. 2012. Use of stable isotope dimethyl labeling coupled to selected reaction monitoring to enhance throughput by multiplexing relative quantitation of targeted proteins. Analytical Chemistry. 84: 4999-5006. doi: 10.1021/ac300596r
  • Côté, Richard G.; Griss, Johannes; Dianes, José A.; Wang, Rui; Wright, James C.; van den Toorn, Henk W.P.; van Breukelen, Bas; Heck, Albert J. R.; Hulstaert, Niels; Martens, Lennart; Reisinger, Florian; Csordas, Attila; Ovelleiro, David; Perez-Rivevol, Yasset; Barsnes, Harald; Hermjakob, Henning; Vizcaíno, Juan Antonio. 2012. The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium. Molecular & Cellular Proteomics. 11: 1682-1689. doi: 10.1074/mcp.O112.021543
  • Arntzen, Magnus; Koehler, Christian; Barsnes, Harald; Berven, Frode; Treumann, Achim; Thiede, Bernd. 2011. IsobariQ: Software for Isobaric Quantitative Proteomics using IPTL, iTRAQ, and TMT. Journal of Proteome Research. 10: 913-920. doi: 10.1021/pr1009977
  • Barsnes, Harald; Eidhammer, Ingvar; Martens, Lennart. 2011. A global analysis of peptide fragmentation variability. Proteomics. 11: 1181-1188. doi: 10.1002/pmic.201000640
  • Barsnes, Harald; Vaudel, Marc; Colaert, Niklaas; Helsens, Kenny; Sickmann, Albert; Berven, Frode; Martens, Lennart. 2011. compomics-utilities: an open-source Java library for computational proteomics. BMC Bioinformatics. 12. 5 pages. doi: 10.1186/1471-2105-12-70
  • Barsnes, Harald; Vizcaíno, Juan Antonio; Reisinger, Florian; Eidhammer, Ingvar; Martens, Lennart. 2011. Submitting proteomics data to PRIDE using PRIDE Converter. Methods in molecular biology. 694: 237-253. doi: 10.1007/978-1-60761-977-2_16
  • Colaert, Niklaas; Barsnes, Harald; Vaudel, Marc; Helsens, Kenny; Timmerman, Evy; Sickmann, Albert; Gevaert, Kris; Martens, Lennart. 2011. thermo-msf-parser: An Open Source Java Library to Parse and Visualize Thermo Proteome Discoverer msf Files. Journal of Proteome Research. 10: 3840-3843. doi: 10.1021/pr2005154
  • Vaudel, Marc; Barsnes, Harald; Berven, Frode; Sickmann, Albert; Martens, Lennart Martens. 2011. SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches. Proteomics. 11: 996-999. doi: 10.1002/pmic.201000595
  • Barsnes, Harald; Côté, Richard G.; Eidhammer, Ingvar; Martens, Lennart. 2010. OLS Dialog: An open-source front end to the Ontology Lookup Service. BMC Bioinformatics. 11. doi: 10.1186/1471-2105-11-34
  • Barsnes, Harald; Eidhammer, Ingvar; Martens, Lennart. 2010. Fragmentation Analyzer: An open-source tool to analyze MS/MS fragmentation data. Proteomics. 10: 1087-1090. doi: 10.1002/pmic.200900681
  • Côté, Richard G.; Reisinger, Florian; Martens, Lennart; Barsnes, Harald; Vizcaíno, Juan Antonio; Hermjakob, Henning. 2010. The Ontology Lookup Service: bigger and better. Nucleic Acids Research. 38: W155-W160. doi: 10.1093/nar/gkq331
  • Helsens, Kenny; Colaert, Niklaas; Barsnes, Harald; Muth, Thilo; Flikka, Kristian; Staes, An; Timmerman, Evy; Wortelkamp, Steffi; Sickmann, Albert; Vandekerckhove, Joel; Gevaert, Kris; Martens, Lennart. 2010. ms_lims, a simple yet powerful open source LIMS for mass spectrometry-driven proteomics. Proteomics. 10: 1261-1264. doi: 10.1002/pmic.200900409
  • Muth, Thilo; Vaudel, Marc; Barsnes, Harald; Martens, Lennart; Sickmann, Albert. 2010. XTandem Parser: An open-source library to parse and analyse X!Tandem MS/MS search results. Proteomics. 10: 1522-1524. doi: 10.1002/pmic.200900759
  • Vizcaíno, Juan Antonio; Côté, Richard G.; Reisinger, Florian; Barsnes, Harald; Foster, JM; Rameseder, Jonathan; Hermjakob, Henning; Martens, Lennart. 2010. The Proteomics Identifications database: 2010 update. Nucleic Acids Research. 38: D736-D742. doi: 10.1093/nar/gkp964
  • Barsnes, Harald; Huber, Steffen; Sickmann, Albert; Eidhammer, Ingvar; Martens, Lennart. 2009. OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results. Proteomics. 9: 3772-3774. doi: 10.1002/pmic.200900037
  • Barsnes, Harald; Vizcaíno, Juan Antonio; Eidhammer, Ingvar; Martens, Lennart. 2009. PRIDE Converter: making proteomics data-sharing easy. Nature Biotechnology. 27: 598-599. doi: 10.1038/nbt0709-598
  • Eisenacher, Martin; Kohl, Michael; Martens, Lennart; Barsnes, Harald; Hardt, Tanja; Levander, Fredrik; Häkkinen, Jari; Rolf, Apweiler; Meyer, Helmut E.; Stephan, Christian. 2009. Proteomics data collection - 4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands. Proteomics. 9: 218-222. doi: 10.1002/pmic.200800732
  • Eisenacher, Martin; Martens, Lennart; Barsnes, Harald; Hardt, Tanja; Kohl, Michael; Häkkinen, Jari; Apweiler, Rolf; Meyer, Helmut E.; Stephan, Christian. 2009. Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece. Proteomics. 9: 3626-3629. doi: 10.1002/pmic.200900205
  • Eisenacher, Martin; Martens, Lennart; Hardt, Tanja; Kohl, Michael; Barsnes, Harald; Helsens, Kenny; Häkkinen, Jari; Levander, Fredrik; Aebersold, Ruedi; Vandekerckhove, Joel; Dunn, Michael J.; Frederique, Lisacek; Siepen, Jennifer A.; Hubbard, Simon J.; Pierre-Alain, Binz; Blüggel, Martin; Thiele, Herbert; Cottrell, John; Meyer, Helmut E.; Apweiler, Rolf; Stephan, Christian. 2009. Getting a grip on proteomics data - Proteomics Data Collection (ProDaC). Proteomics. 9: 3928-3933. doi: 10.1002/pmic.200900247
  • Barsnes, Harald; Eidhammer, Ingvar; Cruciani, Véronique; Mikalsen, Svein-Ole. 2008. Protease-dependent fractional mass and peptide properties. European Journal of Mass Spectrometry. 14: 311-317. doi: 10.1255/ejms.934
  • Barsnes, Harald; Mikalsen, Svein-Ole; Eidhammer, Ingvar. 2008. Blind search for post-translational modifications and amino acid substitutions using peptide mass fingerprints from two proteases. BMC Research Notes. 1.
  • Barsnes, Harald; Mikalsen, Svein-Ole; Eidhammer, Ingvar. 2006. MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences. BMC Bioinformatics. 7. 9 pages. doi: 10.1186/1471-2105-7-42
Book sections
  • Aasebø, Elise; Berven, Frode; Selheim, Frode; Barsnes, Harald; Vaudel, Marc. 2016. Interpretation of Quantitative Shotgun Proteomic Data. Chapter 19, pages 261-274. In:
    • Reinders, Jörg. 2016. Proteomics in Systems Biology. Springer. 313 pages. ISBN: 978-1-4939-3339-6.
  • Guldbrandsen, Astrid; Barsnes, Harald; Kroksveen, Ann Cathrine; Berven, Frode; Vaudel, Marc. 2016. A Simple Workflow for Large Scale Shotgun Glycoproteomics. Chapter 20, pages 275-286. In:
    • Reinders, Jörg. 2016. Proteomics in Systems Biology. Springer. 313 pages. ISBN: 978-1-4939-3339-6.
  • Lereim, Ragnhild Reehorst; Oveland, Eystein; Berven, Frode; Vaudel, Marc; Barsnes, Harald. 2016. Visualization, Inspection and Interpretation of Shotgun Proteomics Identification Results. Part III Bioinformatic Tools for Proteomics data Analysis, pages 227-236. In:
    • Mirzaei, Hamid; Carrasco, Martin. 2016. Modern Proteomics – Sample Preparation, Analysis and Practical Applications. Springer. 525 pages. ISBN: 978-3-319-41446-1.
  • Muth, Thilo; Rapp, Erdmann; Berven, Frode; Barsnes, Harald; Vaudel, Marc. 2016. Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics. Part III Bioinformatic Tools for Proteomics data Analysis, pages 217-226. In:
    • Mirzaei, Hamid; Carrasco, Martin. 2016. Modern Proteomics – Sample Preparation, Analysis and Practical Applications. Springer. 525 pages. ISBN: 978-3-319-41446-1.
  • Verheggen, Kenneth; Martens, Lennart; Berven, Frode; Barsnes, Harald; Vaudel, Marc. 2016. Database Search Engines: Paradigms, Challenges and Solutions. Part II Mass Spectrometry for Proteomics Analysis, pages 147-156. In:
    • Mirzaei, Hamid; Carrasco, Martin. 2016. Modern Proteomics – Sample Preparation, Analysis and Practical Applications. Springer. 525 pages. ISBN: 978-3-319-41446-1.
  • Vaudel, Marc; Barsnes, Harald; Martens, Lennart; Berven, Frode. 2014. Bioinformatics for Proteomics: Opportunities at the interface between the scientists, their experiments and the community. Part VI, pages 239-248. In:
    • Martins-de-Souza, Daniel. 2014. Shotgun Proteomics. Springer. 492 pages. ISBN: 978-1-4939-0684-0.
  • Eidhammer, Ingvar; Barsnes, Harald; Mikalsen, Svein-Ole. 2008. MassSorter: Peptide Mass Fingerprinting Data Analysis. 23, pages 345-359. In:
    • Thompson, Julie D.; Schaeffer-Reiss, Christine; Ueffing, Marius. 2008. Functional proteomics: Methods and protocols. Humana Press. 595 pages. ISBN: 978-1-58829-971-0.

More information in national current research information system (CRIStin)

Research groups