Inge Jonassen

Professor, Director of Computational Biology Unit

E-mailInge.Jonassen@uib.no
Phone+47 55 58 47 13+47 905 24 316
Visitor Address
HIB - Thormøhlensgt. 55
Postal Address
Postboks 7803

5020 Bergen

My field of research is bioinformatics - development and application of informatics methods for the analysis of molecular biology data. My interests include methods for the automatic discovery of patterns, data analysis, algorithms and machine learning applied on molecular biology data. The research in my group includes tight collaboration with experimental groups wihtin different fields of biological and medical research. I work with analysis of different types of data including DNA sequences (including genomes), protein sequences and structures, gene expression data, and data generated usiing high-throughput technologies, e.g., next-generation sequencing. My group is also engaged in development and applicationof methods for integration of data and tools within bioinformatics.

I teach mostly bioinformatics courses, but I have also been teaching user courses in informatics and operating systems.

Goksøyr, Anders; Alendal, Guttorm; Aranguren-Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Denslow, Nancy; Eide, Marta; Fallahi, Shirin; Goksøyr, Siri Øfsthus; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hanna, Eileen Marie; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Lille-Langøy, Roger; Lyche, Jan Ludvig; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre. 2019. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR.
Goksøyr, Anders; Alendal, Guttorm; Aranguren-Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Eide, Marta; Fallahi, Shirin; Goksøyr, Siri Øfsthus; Hanna, Eileen Marie; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Lille-Langøy, Roger; Lyche, Jan Ludvig; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Stegeman, John J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre. 2019. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR.
Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Reboa, Anna; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2019. Toxicogenomic responses in Atlantic cod (Gadus morhua) after treatment with selected environmental contaminants in vivo and ex vivo.
Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders. 2019. The chemical defensome of Atlantic cod (Gadus morhua).
Zhang, Xiaokang; Eide, Marta; Karlsen, Odd Andre; Hanna, Eileen Marie; Brun, Morten; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders. 2019. THE CHEMICAL DEFENSOME OF ATLANTIC COD (GADUS MORHUA): HOW DOES IT DIFFER FROM DEFENSOME NETWORKS IN OTHER TELEOST SPECIES?
Zhang, Xiaokang; Jonassen, Inge. 2019. RASflow: An Easy-to-use RNA-Seq Analysis Workflow.
Romanowska, Julia; Haaland, Øystein Ariansen; Jugessur, Astanand; Gjerdevik, Miriam; Xu, Zongli; Taylor, Jack A.; Wilcox, Allen J; Jonassen, Inge; Lie, Rolv T.; Gjessing, Håkon K. 2019. Gene-methylation interactions: Discovering region-wise DNA methylation levels that modify SNP-associated disease risk. bioRxiv - the preprint server for biology.
Rye, Morten Beck; Nygård, Ståle; Drabløs, Finn; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder; Hovig, Eivind; Jonassen, Inge. 2019. ELIXIR.NO - The national infrastructure of bioinformatics.
Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Reboa, Anna; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2019. EFFECTS OF SELECTED ENVIRONMENTAL ESTROGENS ON EXPRESSION OF FIBROBLAST GROWTH FACTOR SIGNALING PATHWAY GENES IN THE LIVER OF ATLANTIC COD (GADUS MORHUA) IN VIVO AND EX VIVO.
Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Goldstone, Jared V.; Stegeman, John J.; Jonassen, Inge; Goksøyr, Anders. 2019. Chemical warfare in the marine environment.
Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Goldstone, Jared V.; Stegeman, John J.; Jonassen, Inge; Goksøyr, Anders. 2019. Chemical warfare in the aquatic environment - The chemical defensome networks of model fish species.
Xue, Yaxin; Jonassen, Inge; Øvreås, Lise; Tas, Neslihan. 2019. Bacterial and archaeal metagenome-assembled genome sequences from Svalbard permafrost. Microbiology Resource Announcements (MRA). 1-3.
Zhang, Xiaokang; Jonassen, Inge. 2019. An Ensemble Feature Selection Framework Integrating Stability.
Hanna, Eileen Marie; Zhang, Xiaokang; Eide, Marta; Yadetie, Fekadu; Blaser, Nello; Alendal, Guttorm; Goksøyr, Anders; Jonassen, Inge. 2019. A draft metabolic reconstruction of Atlantic cod (Gadus morhua) liver: how to and what for?
Hanna, Eileen Marie; Zhang, Xiaokang; Fallahi, Shirin; Eide, Marta; Yadetie, Fekadu; Blaser, Nello; Alendal, Guttorm; Goksøyr, Anders; Jonassen, Inge. 2019. A draft metabolic reconstruction of Atlantic cod (Gadus morhua) liver .
Zhang, Xiaokang; Jonassen, Inge. 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-treated Atlantic Cod (Gadus morhua) Liver.
Zhang, Xiaokang; Jonassen, Inge. 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver. 10 pages.
Zhang, Xiaokang; Jonassen, Inge. 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver. Communications in Computer and Information Science. 114-123.

Goksøyr, Anders; Alendal, Guttorm; Aranguren Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Dankel, Dorothy Jane; Denslow, Nancy; Eide, Marta; Fallahi, Shirin; Frøysa, Håvard G; Ghavidel, Fatemeh; Goksøyr, Siri Øfsthus; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hanna, Eileen Marie; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Kleppe, Rune; Lille-Langøy, Roger; Lyche, Jan Ludvig; Mayer, Ian; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Stegeman, John J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre. 2018. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA).
Karlsen, Odd Andre; Sôderstrôm, Sofie; Goksøyr, Siri Øfsthus; Aranguren, Libe; Lille-Langøy, Roger; Eide, Marta; Zhang, Xiaokang; Jonassen, Inge; Yadetie, Fekadu; Goksøyr, Anders. 2018. The nuclear receptor complement of Atlantic cod (Gadus morhua) as potential targets for endocrine disrupting compounds.
Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Aranguren Abadía, Libe; Eide, Marta; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2018. RNA-seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol.
Hanna, Eileen Marie; Blaser, Nello; Brun, Morten; Yadetie, Fekadu; Goksøyr, Anders; Jonassen, Inge. 2018. Persistent homology and network analyses reveal key gene interactions affected by environmental pollutants in Atlantic cod.
Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Jonassen, Inge. 2018. Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research. 15 pages.
Zhang, Xiaokang; Eide, Marta; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders. 2018. Modelling the chemical defensome networks --- a dynamic visualisation of the involved genes and interactions in two fish species and human.
Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders. 2018. Modelling the chemical defensome network - a dynamic visualisation of the involved genes and pathways in two fish species and humans .
Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders. 2018. Modelling The Chemical Defensome Networks - A Comparative Dynamic Visualisation Of The Involved Genes And Interactions In Two Fish Species And Humans.
Dondrup, Michael; Zhang, Wei; Nilsen, Frank; Jonassen, Inge. 2018. LiceBase – genom-data som kan bidra til kontroll av lakselus.
Zhang, Xiaokang; Jonassen, Inge. 2018. EFSIS: Ensemble Feature Selection Integrating Stability.
Zhang, Xiaokang; Jonassen, Inge. 2018. EFSIS: Ensemble Feature Selection Integrating Stability.
Blaser, Nello; Hanna, Eileen Marie; Brun, Morten; Eide, Marta; Yadetie, Fekadu; Goksøyr, Anders; Jonassen, Inge. 2018. Discovering pathway perturbations with topological edge set enrichment analysis (TESEA).

More information in national current research information system (CRIStin)

For publications, see also my https://scholar.google.com/citations?user=RqvFRN4AAAAJ&hl=no&oi=ao

Fields of competence