Jan Byška

Associate Professor

Academic article

2020. Visual exploration of large normal mode spaces to study protein flexibility. Computers & graphics.
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2020. Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool. Methods in molecular biology. 81-94.
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2020. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Transactions on Visualization and Computer Graphics.
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2020. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Transactions on Visualization and Computer Graphics. 843-852.
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2020. Dynamics-function relationship in the catalytic domains of N-terminal acetyltransferases. Computational and Structural Biotechnology Journal. 532-547.
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2019. Visual Analysis of Ligand Trajectories in Molecular Dynamics . IEEE Pacific Visualization Symposium. 212-221.
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2019. Scale-Space Splatting: Reforming Spacetime for Cross-Scale Exploration of Integral Measures in Molecular Dynamics. IEEE Transactions on Visualization and Computer Graphics. 643-653.
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2019. Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization. Computer Graphics Forum. 441-453.
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2018. COZOID: contact zone identifier for visual analysis of protein-protein interactions. BMC Bioinformatics. 1-17.
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2018. CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories. Bioinformatics. 3586-3588.
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2018. A de novo Ser111Thr variant in aquaporin-4 in a patient with intellectual disability, transient signs of brain ischemia, transient cardiac hypertrophy, and progressive gait disturbance. Cold Spring Harbor Molecular Case Studies.
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2017. Interactive Exploration of Ligand Transportation through Protein Tunnels. BMC Bioinformatics.
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2017. Comparative Visualization of Protein Secondary Structures. BMC Bioinformatics.
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2016. Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics. Eurographics Workshop on Visual Computing for Biomedicine.
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2016. AnimoAminoMiner: exploration of protein tunnels and their properties in molecular dynamics. IEEE Transactions on Visualization and Computer Graphics. 747-756.
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Academic lecture

2017. Watergate: Visual Exploration of Water Trajectories in Protein Dynamics.
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Academic chapter/article/Conference paper

2020. Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool. 14 pages.
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2019. DockVis: Visual Analysis of Molecular Docking Data. 10 pages.
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