Jan Byška

Associate Professor

Academic article

Furmanová, Katarína; Jurčík, Adam; Kozlíková, Barbora; Hauser, Helwig; Byska, Jan. 2020. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Transactions on Visualization and Computer Graphics.

Jurcik, Adam; Furmanova, Katarina; Byska, Jan; Vonasek, Vojtech; Vavra, Ondrej; Ulbrich, Pavol; Hauser, Helwig; Kozlikova, Barbora. 2019. Visual Analysis of Ligand Trajectories in Molecular Dynamics . IEEE Pacific Visualization Symposium. 212-221.
Palenik, Juraj; Byska, Jan; Bruckner, Stefan; Hauser, Helwig. 2019. Scale-Space Splatting: Reforming Spacetime for Cross-Scale Exploration of Integral Measures in Molecular Dynamics. IEEE Transactions on Visualization and Computer Graphics. 643-653.
Byska, Jan; Trautner, Thomas Bernhard; Marques, S. M.; Damborsky, J.; Kozlikova, B.; Waldner, M. 2019. Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization. Computer graphics forum (Print). 441-453.

Furmanova, Katarina; Byska, Jan; Gröller, Eduard; Viola, Ivan; Paleček, Jan; Kozlíková, Barbora. 2018. COZOID: contact zone identifier for visual analysis of protein-protein interactions. BMC Bioinformatics. 1-17.
Jurcik, Adam; David, Bednar; Byska, Jan; Marques, Sergio M.; Furmanova, Katarina; Lukas, Daniel; Kokkonen, Piia; Brezovsky, Jan; Strnad, Ondrej; Stourac, Jan; Pavelka, Antonin; Manak, Martin; Damborsky, Jiri; Kozlikova, Barbora. 2018. CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories. Bioinformatics. 3586-3588.
Berland, Siren; Toft-Bertelsen, Trine; Aukrust, Ingvild; Byska, Jan; Vaudel, Marc; Bindoff, Laurence; MacAulay, Nanna; Houge, Gunnar. 2018. A de novo Ser111Thr variant in aquaporin-4 in a patient with intellectual disability, transient signs of brain ischemia, transient cardiac hypertrophy, and progressive gait disturbance. Cold Spring Harbor Molecular Case Studies.

Furmanova, Katarina; Jaresova, Miroslava; Byska, Jan; Jurcik, Adam; Parulek, Julius; Hauser, Helwig; Kozlikova, Barbora. 2017. Interactive Exploration of Ligand Transportation through Protein Tunnels. BMC Bioinformatics.
Kocincova, Lucia; Jaresova, Miroslava; Byska, Jan; Parulek, Julius; Hauser, Helwig; Kozlikova, Barbora. 2017. Comparative Visualization of Protein Secondary Structures. BMC Bioinformatics.

Kolesar, Ivan; Byska, Jan; Parulek, Julius; Hauser, Helwig; Kozlíková, Barbora. 2016. Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics. Eurographics Workshop on Visual Computing for Biomedicine.
Byska, Jan; Le Muzic, Mathieu; Gröller, Eduard; Viola, Ivan; Kozlíková, Barbora. 2016. AnimoAminoMiner: exploration of protein tunnels and their properties in molecular dynamics. IEEE Transactions on Visualization and Computer Graphics. 747-756.

Academic lecture

Vad, Viktor; Byska, Jan; Jurčík, Adam; Viola, Ivan; Gröller, Eduard; Hauser, Helwig; Marques, Sergio M; Damborsky, Jiri; Kozlíková, Barbora. 2017. Watergate: Visual Exploration of Water Trajectories in Protein Dynamics.

Academic chapter/article/Conference paper

Byska, Jan; Jurčík, Adam; Furmanová, Katarína; Kozlíková, Barbora; Paleček, Jan. 2020. Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool. 14 pages.

Furmanová, Katarína; Kozlíková, Barbora; Vonásek, Vojtěch; Byska, Jan. 2019. DockVis: Visual Analysis of Molecular Docking Data. 10 pages.