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University of Bergen
Kjell Petersen's picture

Kjell Petersen

Researcher
Department of Informatics Computational Biology Unit
  • E-mailkjell.petersen@uib.no
  • Phone+47 55 58 40 37
  • Visitor Address
    HIB / Thormøhlensgt. 55
  • Postal Address
    Postboks 7803
    5020 Bergen
Academic article
  • Show author(s) (2020). Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition. Acta neuropathologica communications. 1-14.
  • Show author(s) (2019). Inhibition of mitochondrial respiration prevents BRAF-mutant melanoma brain metastasis. Acta neuropathologica communications. 1-19.
  • Show author(s) (2018). Transcriptome-wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure. Scientific Reports. 1-14.
  • Show author(s) (2018). Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research. 15 pages.
  • Show author(s) (2018). Identification of highly connected and differentially expressed gene subnetworks in metastasizing endometrial cancer. PLOS ONE. 1-21.
  • Show author(s) (2017). Tumour-associated glial host cells display a stem-like phenotype with a distinct gene expression profile and promote growth of GBM xenografts. BMC Cancer. 1-13.
  • Show author(s) (2016). RareVariantVis: New tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data. Bioinformatics. 3018-3020.
  • Show author(s) (2016). EPHB4 kinase-inactivating mutations cause autosomal dominant lymphatic-related hydrops fetalis. Journal of Clinical Investigation. 3080-3088.
  • Show author(s) (2015). Syndromic X-linked intellectual disability segregating with a missense variant in RLIM. European Journal of Human Genetics. 1652-1656.
  • Show author(s) (2015). Distributed and interactive visual analysis of omics data. Journal of Proteomics. 78-82.
  • Show author(s) (2014). Switch in FOXA1 status associates with endometrial cancer progression. PLOS ONE.
  • Show author(s) (2014). Hypomethylation of the CTCFL/BORIS promoter and aberrant expression during endometrial cancer progression suggests a role as an Epi-driver gene. OncoTarget. 1052-1061.
  • Show author(s) (2014). Endometrial Carcinoma Recurrence Score (ECARS) validates to identify aggressive disease and associates with markers of epithelial-mesenchymal transition and PI3K alterations. Gynecologic Oncology. 599-606.
  • Show author(s) (2014). Dip in the gene pool: Metagenomic survey of natural coccolithovirus communities. Virology. 129-137.
  • Show author(s) (2013). Somatic maintenance resources in the honeybee worker fat body are distributed to withstand the most life-threatening challenges at each life stage. PLOS ONE.
  • Show author(s) (2013). Pipelined data-flow delegated orchestration for data-intensive eScience workflows. International Journal of Web Information Systems. 204-218.
  • Show author(s) (2013). High phospho-stathmin(Serine38) expression identifies aggressive endometrial cancer and suggests an association with PI3K inhibition. Clinical Cancer Research. 2331-2341.
  • Show author(s) (2013). Gene set based integrated data analysis reveals phenotypic differences in a brain cancer model. PLOS ONE. 11 pages.
  • Show author(s) (2013). Age-dependent association between protein expression of the embryonic stem cell marker Cripto-1 and survival of glioblastoma patients. Translational Oncology. 732-741.
  • Show author(s) (2013). ARID1A loss is prevalent in endometrial hyperplasia with atypia and low-grade endometrioid carcinomas. Modern Pathology. 428-434.
  • Show author(s) (2012). KRAS gene amplification and overexpression but not mutation associates with aggressive and metastatic endometrial cancer. British Journal of Cancer. 1997-2004.
  • Show author(s) (2012). High-throughput mutation profiling of primary and metastatic endometrial cancers identifies KRAS, FGFR2 and PIK3CA to be frequently mutated. PLOS ONE.
  • Show author(s) (2012). Expression profile of heat shock proteins in acute myeloid leukaemia patients reveals a distinct signature strongly associated with FLT3 mutation status - consequences and potentials for pharmacological intervention. British Journal of Haematology. 468-480.
  • Show author(s) (2011). Hepatic in vitro toxicity assessment of PBDE congeners BDE47, BDE153 and BDE154 in Atlantic salmon (Salmo salar L.). Aquatic Toxicology. 246-263.
  • Show author(s) (2011). Data partitioning enables the use of standard SOAP Web Services in genome-scale workflows. Journal of Integrative Bioinformatics (JIB). 20 pages.
  • Show author(s) (2011). Are apparent negative effects of feeding GM MON810 maize to Atlantic salmon, Salmo salar, caused by confounding factors? British Journal of Nutrition. 42-56.
  • Show author(s) (2011). A prospective observational study of the effect of platelet transfusions on levels of platelet-derived cytokines, chemokines and interleukins in acute leukaemia patients with severe chemotherapy-induced cytopenia. European Cytokine Network. 52-62.
  • Show author(s) (2009). iTRAQ-based proteomics profiling reveals increased metabolic activity and cellular cross-talk in angiogenic compared with invasive glioblastoma phenotype. Molecular & Cellular Proteomics. 2595-2612.
  • Show author(s) (2009). Highly infiltrative brain tumours show reduced chemosensitivity associated with a stem cell-like phenotype. Neuropathology and Applied Neurobiology. 380-393.
  • Show author(s) (2009). Highly infiltrative brain tumours show reduced chemosensitivity associated with a stem cell-like phenotype. Neuropathology and Applied Neurobiology. 380-393.
  • Show author(s) (2009). Genome-wide transcription analysis of histidine-related cataract in Atlantic salmon (Salmo salar L). Molecular Vision. 1332-1350.
  • Show author(s) (2009). Genome-wide profiling of histone H3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis. PLOS ONE. 14 pages.
  • Show author(s) (2008). Pharmacokinetics and transcriptional effects of the anti-salmon lice drug emamectin benzoate in Atlantic salmon (Salmo salar L.). BMC Pharmacology. 14 pages.
  • Show author(s) (2007). The influence of the NOD Nss1/Idd5 loci on sialadenitis and gene expression in salivary glands of congenic mice. Arthritis Research & Therapy. 1-15.
  • Show author(s) (2007). Hyperoxia retards growth and induces apoptosis, changes in vascular density and gene expression in transplanted gliomas in nude rats. Journal of Neuro-Oncology. 191-202.
  • Show author(s) (2007). Gene expression profiles in rat brain disclose CNS signature genes and regional patterns of functional specialisation. BMC Genomics.
  • Show author(s) (2007). Comparison of nucleic acid targets prepared from total RNA or poly(A) RNA for DNA oligonucleotide microarray hybridization. Analytical Biochemistry. 46-58.
  • Show author(s) (2006). Angiogenesis-independent tumor growth mediated by stem-like cancer cells. Proceedings of the National Academy of Sciences of the United States of America. 16466-16471.
  • Show author(s) (2005). Gene expression profiling of minor salivary glands clearly distinguishes primary Sjögren's syndrome patients from healthy control subjects. Arthritis and Rheumatism. 1534-1544.
Lecture
  • Show author(s) (2019). ELIXIR.NO - The national infrastructure of bioinformatics.
  • Show author(s) (2018). Implementing Data Management in Digital Life Norway.
  • Show author(s) (2017). ELIXIR.NO - The national infrastructure for bioinformatics.
  • Show author(s) (2017). Data Management in Digital Life Norway - Integration of NeLS and SEEK.
  • Show author(s) (2014). ELIXIR - An infrastructure for bioinformatics.
  • Show author(s) (2013). The national technology platform for bioinformatics.
Academic lecture
  • Show author(s) (2009). Genome-wide transcription analysis of histidine-related cataract in Atlantic salmon (Salmo salar L).
  • Show author(s) (2009). Genome-wide profiling of histone H3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis.
  • Show author(s) (2009). Genome-wide profiling of histone H3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis.
  • Show author(s) (1997). Structure Prediction of the Zinc-finger Protein Family by the use of a Parallel Genetic Algorithm.
Thesis at a second degree level
  • Show author(s) (1997). Structure prediction of the zinc-finger protein family by the use of a parallel genetic algorithm.
Doctoral dissertation
  • Show author(s) (2002). Zinc finger protein structure modelling using GADGET Genetic Algoriithm and Distance Geometry for Exploring Topology.
Academic chapter/article/Conference paper
  • Show author(s) (2012). Direct data transfer between SOAP web services in orchestration. 10 pages.
Abstract
  • Show author(s) (2010). The FUGE Bioinformatics platform: a central platform in the FUGE2 period. MITAT. Minimally invasive therapy & allied technologies. 70-71.
  • Show author(s) (2004). Gene expression profiling of minor salivary glands in primary Sjögren's syndrome clearly groups patients and healthy control indiviluals. Arthritis and Rheumatism. S577-S577.
Poster
  • Show author(s) (2020). End-to-End Data Management Toolkit for Norwegian Life Scientists.
  • Show author(s) (2012). Identification of metastasis subnetworks in endometrial cancer.
  • Show author(s) (2012). An ensemble-based feature selection algorithm for identifying candidate metastasis marker genes in endometrial cancer.
  • Show author(s) (2010). The FUGE Bioinformatics platform: a central platform in the FUGE2 period.
  • Show author(s) (2009). Highly infiltrative brain tumors show reduced chemosensitivity associated with a stem cell-like phenotype.
  • Show author(s) (2009). Genome-wide profiling of histone H3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis.
  • Show author(s) (2009). Genome-wide profiling of histone H3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis.
  • Show author(s) (2009). Genome-wide profiling of histone H3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis.
  • Show author(s) (2009). Genome-wide profiling of histone H3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis.
  • Show author(s) (2005). The influence of Nss1/Idd5 loci on sialadenitis and salivary gland gene expression in congenic mice models. Arthritis Rheum 2005; 52; (9) S374. Abstract no. 957.

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