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Xiaokang Zhang

PhD Candidate
  • E-mailXiaokang.Zhang@uib.no
  • Visitor Address
    HIB - Thormøhlensgt. 55
  • Postal Address
    Postboks 7803
    5020 Bergen

My research interest is the application of machine learning (especially feature selection) in bioinformatics and systems biology. My PhD project also includes lots of data analysis on transcriptomics and proteomics.

Academic article
  • Zhang, Xiaokang; Jonassen, Inge. 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver. Communications in Computer and Information Science. 114-123.
  • Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2018. RNA-Seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision-cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol. Aquatic Toxicology. 174-186.
Lecture
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Goldstone, Jared V.; Stegeman, John J.; Jonassen, Inge; Goksøyr, Anders. 2019. Chemical warfare in the marine environment.
  • Zhang, Xiaokang; Jonassen, Inge. 2019. An Ensemble Feature Selection Framework Integrating Stability.
  • Hanna, Eileen Marie; Zhang, Xiaokang; Eide, Marta; Yadetie, Fekadu; Blaser, Nello; Alendal, Guttorm; Goksøyr, Anders; Jonassen, Inge. 2019. A draft metabolic reconstruction of Atlantic cod (Gadus morhua) liver: how to and what for?
Academic lecture
  • Goksøyr, Anders; Alendal, Guttorm; Aranguren-Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Denslow, Nancy; Eide, Marta; Fallahi, Shirin; Goksøyr, Siri Øfsthus; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hanna, Eileen Marie; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Lille-Langøy, Roger; Lyche, Jan Ludvig; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre. 2019. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR.
  • Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Reboa, Anna; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2019. Toxicogenomic responses in Atlantic cod (Gadus morhua) after treatment with selected environmental contaminants in vivo and ex vivo.
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders. 2019. The chemical defensome of Atlantic cod (Gadus morhua).
  • Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Reboa, Anna; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2019. EFFECTS OF SELECTED ENVIRONMENTAL ESTROGENS ON EXPRESSION OF FIBROBLAST GROWTH FACTOR SIGNALING PATHWAY GENES IN THE LIVER OF ATLANTIC COD (GADUS MORHUA) IN VIVO AND EX VIVO.
  • Goksøyr, Anders; Alendal, Guttorm; Aranguren Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Dankel, Dorothy Jane; Denslow, Nancy; Eide, Marta; Fallahi, Shirin; Frøysa, Håvard G; Ghavidel, Fatemeh; Goksøyr, Siri Øfsthus; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hanna, Eileen Marie; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Kleppe, Rune; Lille-Langøy, Roger; Lyche, Jan Ludvig; Mayer, Ian; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Stegeman, John J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre. 2018. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA).
  • Karlsen, Odd Andre; Sôderstrôm, Sofie; Goksøyr, Siri Øfsthus; Aranguren, Libe; Lille-Langøy, Roger; Eide, Marta; Zhang, Xiaokang; Jonassen, Inge; Yadetie, Fekadu; Goksøyr, Anders. 2018. The nuclear receptor complement of Atlantic cod (Gadus morhua) as potential targets for endocrine disrupting compounds.
  • Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Aranguren Abadía, Libe; Eide, Marta; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2018. RNA-seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol.
  • Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Aranguren Abadía, Libe; Eide, Marta; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2018. RNA-seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol.
  • Zhang, Xiaokang; Eide, Marta; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders. 2018. Modelling the chemical defensome networks --- a dynamic visualisation of the involved genes and interactions in two fish species and human.
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders. 2018. Modelling the chemical defensome network - a dynamic visualisation of the involved genes and pathways in two fish species and humans .
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders. 2018. Modelling The Chemical Defensome Networks - A Comparative Dynamic Visualisation Of The Involved Genes And Interactions In Two Fish Species And Humans.
  • Yadetie, Fekadu; Eide, Marta; Söderström, Sofie; Kolås, Mari Forshaug; Steinkopf, Oline Marie; Lille-Langøy, Roger; Aranguren, Libe; Goksøyr, Siri Øfsthus; Dale, Karina; Zhang, Xiaokang; Hanna, Eileen Marie; Blaser, Nello; Brun, Morten; Skaug, Hans J.; Karlsen, Odd Andre; Jonassen, Inge; Goksøyr, Anders. 2017. PRECISION-CUT LIVER SLICES (PCLS) FOR TOXICOGENOMIC STUDIES IN ATLANTIC COD (Gadus morhua): THE dCOD 1.0 PROJECT.
Academic chapter/article/Conference paper
  • Zhang, Xiaokang; Jonassen, Inge. 2019. An Ensemble Feature Selection Framework Integrating Stability. 7 pages.
  • Zhang, Xiaokang; Jonassen, Inge. 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver. 10 pages.
Poster
  • Goksøyr, Anders; Alendal, Guttorm; Aranguren-Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Eide, Marta; Fallahi, Shirin; Goksøyr, Siri Øfsthus; Hanna, Eileen Marie; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Lille-Langøy, Roger; Lyche, Jan Ludvig; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Stegeman, John J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre. 2019. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR.
  • Zhang, Xiaokang; Eide, Marta; Karlsen, Odd Andre; Hanna, Eileen Marie; Brun, Morten; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders. 2019. THE CHEMICAL DEFENSOME OF ATLANTIC COD (GADUS MORHUA): HOW DOES IT DIFFER FROM DEFENSOME NETWORKS IN OTHER TELEOST SPECIES?
  • Zhang, Xiaokang; Jonassen, Inge. 2019. RASflow: An Easy-to-use RNA-Seq Analysis Workflow.
  • Brun, Morten; Dale, Karina; Zhang, Xiaokang. 2019. Multiexposure Proteomics.
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Goldstone, Jared V.; Stegeman, John J.; Jonassen, Inge; Goksøyr, Anders. 2019. Chemical warfare in the aquatic environment - The chemical defensome networks of model fish species.
  • Hanna, Eileen Marie; Zhang, Xiaokang; Fallahi, Shirin; Eide, Marta; Yadetie, Fekadu; Blaser, Nello; Alendal, Guttorm; Goksøyr, Anders; Jonassen, Inge. 2019. A draft metabolic reconstruction of Atlantic cod (Gadus morhua) liver .
  • Zhang, Xiaokang; Jonassen, Inge. 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-treated Atlantic Cod (Gadus morhua) Liver.
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders. 2018. MODELLING THE CHEMICAL DEFENSOME NETWORKS - a comparative visualisation of the defense genes and interactions in two fish species and human.
  • Zhang, Xiaokang; Jonassen, Inge. 2018. EFSIS: Ensemble Feature Selection Integrating Stability.
  • Zhang, Xiaokang; Jonassen, Inge. 2018. EFSIS: Ensemble Feature Selection Integrating Stability.
  • Goksøyr, Anders; Celander, Malin; Alendal, Guttorm; Aranguren, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Dale, Karina; Eide, Marta; Fallahi, Shirin; Goksøyr, Siri Øfsthus; Grøsvik, Bjørn Einar; Karlsen, Odd Andre; Hanna, Eileen Marie; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Lille-Langøy, Roger; Lyche, Jan Ludvig; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Skaug, Hans J.; Tairova, Zhanna; Yadetie, Fekadu; Zamanzad Ghavidel, Fatemeh; Zhang, Xiaokang; Denslow, Nancy; Pampanin, Daniela Maria; Porte, Cinta; Goldstone, Jared V.; Stegeman, John J. 2017. dCod 1.0: decoding the systems toxicology of Atlantic cod (Gadus morhua).
  • Goksøyr, Siri Øfsthus; Goksøyr, Anders; Karlsen, Odd Andre; Yadetie, Fekadu; Eide, Marta; Dale, Karina; Aranguren, Libe; Lille-Langøy, Roger; Dankel, Dorothy Jane; Alendal, Guttorm; Brun, Morten; Skaug, Hans J.; Blaser, Nello; Fallahi, Shirin; Frøysa, Håvard G; Jonassen, Inge; Hanna, Eileen Marie; Ghavidel, Fatemeh; Zhang, Xiaokang; Arukwe, Augustine; Khan, Essa Ahsan; Celander, Malin C.; Denslow, Nancy; Grøsvik, Bjørn Einar; Hylland, Ketil; Tairova, Zhanna; Lyche, Jan Ludvig; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Goldstone, Jed; Stegeman, John. 2017. dCod 1.0 decoding the systems toxicology of Atlantic cod.
  • Zhang, Xiaokang; Jonassen, Inge. 2017. A comparative analysis of feature selection methods for biomarker discovery in study of toxicant-treated atlantic cod (Gadus morhua) liver.

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