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Xiaokang Zhang's picture

Xiaokang Zhang

PhD Candidate
  • E-mailXiaokang.Zhang@uib.no
  • Phone+47 981 61 966
  • Visitor Address
    HIB - Thormøhlensgt. 55
  • Postal Address
    Postboks 7803
    5020 Bergen

My research interest is the application of machine learning (especially feature selection) in bioinformatics and systems biology. My PhD project also includes lots of data analysis on transcriptomics and proteomics.

INF226 Software security

INF281 Basics of bioinformatics sequence analysis

Academic article
  • 2020. RASflow: an RNA-Seq analysis workflow with Snakemake. BMC Bioinformatics. 9 pages.
  • 2020. Quantitative transcriptomics, and lipidomics in evaluating ovarian developmental effects in Atlantic cod (Gadus morhua) caged at a capped marine waste disposal site. Environmental Research. 1-11.
  • 2020. Proteomics and lipidomics analyses reveal modulation of lipid metabolism by perfluoroalkyl substances in liver of Atlantic cod (Gadus morhua). Aquatic Toxicology. 13 pages.
  • 2020. Application of quantitative transcriptomics in evaluating the ex vivo effects of per- and polyfluoroalkyl substances on Atlantic cod (Gadus morhua) ovarian physiology. Science of the Total Environment. 1-11.
  • 2018. RNA-Seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision-cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol. Aquatic Toxicology. 174-186.
Lecture
  • 2019. Chemical warfare in the marine environment.
  • 2019. An Ensemble Feature Selection Framework Integrating Stability.
  • 2019. A draft metabolic reconstruction of Atlantic cod (Gadus morhua) liver: how to and what for?
Academic lecture
  • 2020. A multi-omics approach to study Ppar-mediated regulation of lipid metabolism in Atlantic cod (Gadus morhua).
  • 2019. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR.
  • 2019. Toxicogenomic responses in Atlantic cod (Gadus morhua) after treatment with selected environmental contaminants in vivo and ex vivo.
  • 2019. The chemical defensome of Atlantic cod (Gadus morhua).
  • 2019. EFFECTS OF SELECTED ENVIRONMENTAL ESTROGENS ON EXPRESSION OF FIBROBLAST GROWTH FACTOR SIGNALING PATHWAY GENES IN THE LIVER OF ATLANTIC COD (GADUS MORHUA) IN VIVO AND EX VIVO.
  • 2018. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA).
  • 2018. The nuclear receptor complement of Atlantic cod (Gadus morhua) as potential targets for endocrine disrupting compounds.
  • 2018. RNA-seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol.
  • 2018. RNA-seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol.
  • 2018. Modelling the chemical defensome networks --- a dynamic visualisation of the involved genes and interactions in two fish species and human.
  • 2018. Modelling the chemical defensome network - a dynamic visualisation of the involved genes and pathways in two fish species and humans .
  • 2018. Modelling The Chemical Defensome Networks - A Comparative Dynamic Visualisation Of The Involved Genes And Interactions In Two Fish Species And Humans.
  • 2017. PRECISION-CUT LIVER SLICES (PCLS) FOR TOXICOGENOMIC STUDIES IN ATLANTIC COD (Gadus morhua): THE dCOD 1.0 PROJECT.
Academic chapter/article/Conference paper
  • 2019. An Ensemble Feature Selection Framework Integrating Stability. 7 pages.
  • 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver. 10 pages.
Poster
  • 2019. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR.
  • 2019. THE CHEMICAL DEFENSOME OF ATLANTIC COD (GADUS MORHUA): HOW DOES IT DIFFER FROM DEFENSOME NETWORKS IN OTHER TELEOST SPECIES?
  • 2019. RASflow: An Easy-to-use RNA-Seq Analysis Workflow.
  • 2019. Multiexposure Proteomics.
  • 2019. Chemical warfare in the aquatic environment - The chemical defensome networks of model fish species.
  • 2019. A draft metabolic reconstruction of Atlantic cod (Gadus morhua) liver .
  • 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-treated Atlantic Cod (Gadus morhua) Liver.
  • 2018. MODELLING THE CHEMICAL DEFENSOME NETWORKS - a comparative visualisation of the defense genes and interactions in two fish species and human.
  • 2018. EFSIS: Ensemble Feature Selection Integrating Stability.
  • 2018. EFSIS: Ensemble Feature Selection Integrating Stability.
  • 2017. dCod 1.0: decoding the systems toxicology of Atlantic cod (Gadus morhua).
  • 2017. dCod 1.0 decoding the systems toxicology of Atlantic cod.
  • 2017. A comparative analysis of feature selection methods for biomarker discovery in study of toxicant-treated atlantic cod (Gadus morhua) liver.

More information in national current research information system (CRIStin)