- E-postiain.johnston@uib.no
- BesøksadresseAllégaten 41Realfagbygget5007 Bergen
- PostadressePostboks 78035020 Bergen
Vitenskapelig artikkel
- (2023). Stromule Geometry Allows Optimal Spatial Regulation of Organelle Interactions in the Quasi-2D Cytoplasm. Plant and Cell Physiology.
- (2023). Stochastic organelle genome segregation through Arabidopsis development and reproduction. New Phytologist.
- (2023). Mitochondrial network structure controls cell-to-cell mtDNA variability generated by cell divisions. PLoS Computational Biology.
- (2023). Metabolic role of the hepatic valine/3-hydroxyisobutyrate (3-HIB) pathway in fatty liver disease. EBioMedicine. 18 sider.
- (2023). Data science approaches provide a roadmap to understanding the role of abscisic acid in defence. Quantitative Plant Biology.
- (2023). Cellular and environmental dynamics influence species-specific extents of organelle gene retention. Proceedings of the Royal Society of London. Biological Sciences.
- (2023). Avoiding misleading estimates using mtDNA heteroplasmy statistics to study bottleneck size and selection. G3: Genes, Genomes, Genetics.
- (2022). Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution. Proceedings of the National Academy of Sciences of the United States of America.
- (2022). Sorting of mitochondrial and plastid heteroplasmy in Arabidopsis is extremely rapid and depends on MSH1 activity. Proceedings of the National Academy of Sciences of the United States of America.
- (2022). Quantification and uncertainty of root growth stimulation by elevated CO<inf>2</inf> in a mature temperate deciduous forest. Science of the Total Environment.
- (2022). Organelle bottlenecks facilitate evolvability by traversing heteroplasmic fitness valleys. Frontiers in Genetics.
- (2022). Optimal strategies in the Fighting Fantasy gaming system: influencing stochastic dynamics by gambling with limited resource. European Journal of Operational Research. 1272-1281.
- (2022). Interdisciplinary and Transferable Concepts in Bioinformatics Education: Observations and Approaches From a UK MSc Course. Frontiers in Education.
- (2022). HyperHMM: efficient inference of evolutionary and progressive dynamics on hypercubic transition graphs. Bioinformatics.
- (2022). Exchange on dynamic encounter networks allows plant mitochondria to collect complete sets of mitochondrial DNA products despite their incomplete genomes. Quantitative Plant Biology.
- (2022). Evolutionary inference across eukaryotes identifies universal features shaping organelle gene retention. Cell Systems. 874-884.e5.
- (2022). Dynamic Boolean modelling reveals the influence of energy supply on bacterial efflux pump expression. Journal of the Royal Society Interface. 1-14.
- (2022). Altered collective mitochondrial dynamics in the Arabidopsis msh1 mutant compromising organelle DNA maintenance. Journal of Experimental Botany. 5428-5439.
- (2021). Understanding learner behaviour in online courses with Bayesian modelling and time series characterisation. Scientific Reports.
- (2021). Sexually antagonistic evolution of mitochondrial and nuclear linkage. Journal of Evolutionary Biology. 757-766.
- (2021). Network analysis of Arabidopsis mitochondrial dynamics reveals a resolved tradeoff between physical distribution and social connectivity. Cell Systems. 419-431.
- (2021). Avoiding organelle mutational meltdown across eukaryotes with or without a germline bottleneck. PLoS Biology.
- (2021). 2-Deoxy-D-glucose couples mitochondrial DNA replication with mitochondrial fitness and promotes the selection of wild-type over mutant mitochondrial DNA. Nature Communications.
- (2020). S100A4 mRNA-protein relationship uncovered by measurement noise reduction. Journal of Molecular Medicine. 735-749.
- (2020). MtDNA sequence features associated with 'selfish genomes' predict tissue-specific segregation and reversion. Nucleic Acids Research (NAR). 8290-8301.
- (2020). Efficient vasculature investment in tissues can be determined without global information. Journal of the Royal Society Interface.
- (2020). Data-Driven Inference Reveals Distinct and Conserved Dynamic Pathways of Tool Use Emergence across Animal Taxa. iScience.
- (2020). Cell identity and nucleo-mitochondrial genetic context modulate OXPHOS performance and determine somatic heteroplasmy dynamics. Science Advances. 1-13.
- (2019). Varied mechanisms and models for the varying mitochondrial bottleneck. Frontiers in Cell and Developmental Biology. 1-16.
- (2019). Tension and resolution: dynamic, evolving populations of organelle genomes within plant cells. Molecular Plant. 764.
- (2019). Precision identification of high-risk phenotypes and progression pathways in severe malaria without requiring longitudinal data. npj Digital Medicine. 1.
- (2019). Model selection and parameter estimation for root architecture models using likelihood-free inference. Journal of the Royal Society Interface. 1-10.
- (2019). Mitochondrial network state scales mtDNA genetic dynamics. Genetics. 1429-1443.
- (2019). Intracellular Energy Variability Modulates Cellular Decision-Making Capacity. Scientific Reports. 1-12.
- (2019). HyperTraPS: Inferring probabilistic patterns of trait acquisition in evolutionary and disease progression pathways. Cell Systems. 1.
- (2019). Evolving mtDNA populations within cells. Biochemical Society Transactions. 1367.
- (2019). Energetic costs of cellular and therapeutic control of stochastic mitochondrial DNA populations. PLoS Computational Biology. e1007023.
- (2019). Regulation of Mother-to-Offspring Transmission of mtDNA Heteroplasmy. Cell Metabolism.
- (2018). Identification of a bet-hedging network motif generating noise in hormone concentrations and germination propensity in Arabidopsis. Journal of the Royal Society Interface. 20180042.
Brev til redaktøren
- (2022). Reply to Ocklenburg and Mundorf: The interplay of developmental bias and natural selection. Proceedings of the National Academy of Sciences of the United States of America.
Poster
- (2023). Stochastic and Deterministic Computation in the regulation of Decision – Making Genetic circuits by Energy Availability.
- (2023). Population Dynamics in Response to Environmental Stimuli.
Vitenskapelig oversiktsartikkel/review
- (2023). Collective mitochondrial dynamics resolve conflicting cellular tensions: From plants to general principles. Seminars in Cell and Developmental Biology. 253-265.
- (2021). What is quantitative plant biology? Quantitative Plant Biology.