Eivind Valen

Professor, Associate group leader at Sars Centre and NCMM

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Jeg underviser BINF201: Introduksjon til Omics

Vitenskapelig artikkel

Vis forfatter(e) (2022). Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing. Nature Methods.
Vis forfatter(e) (2022). Long-read single-molecule RNA structure sequencing using nanopore. Nucleic Acids Research (NAR). 11 sider.

Vis forfatter(e) (2021). Rapid genome editing by CRISPR-Cas9-POLD3 fusion. eLIFE. 28 sider.
Vis forfatter(e) (2021). ORFik: a comprehensive R toolkit for the analysis of translation. BMC Bioinformatics. 1-16.
Vis forfatter(e) (2021). Deep conservation of ribosome stall sites across RNA processing genes. NAR Genomics and Bioinformatics. 1-13.
Vis forfatter(e) (2021). CRISPR Genome Editing Made Easy Through the CHOPCHOP Website. Current Protocols in Bioinformatics.

Vis forfatter(e) (2020). Profiling of Small Ribosomal Subunits Reveals Modes and Regulation of Translation Initiation. Cell reports. 18 sider.
Vis forfatter(e) (2020). Intellectual disability in KATP channel neonatal diabetes. Diabetes Care. 526-533.
Vis forfatter(e) (2020). Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation. PLoS Genetics. 1-25.
Vis forfatter(e) (2020). Assessment of tumor suppressor promoter methylation in healthy individuals. Clinical Epigenetics. 1-15.

Vis forfatter(e) (2019). tailfindr: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing. RNA: A publication of the RNA Society. 1229-1241.
Vis forfatter(e) (2019). Trans-splicing of mRNAs links gene transcription to translational control regulated by mTOR. BMC Genomics.
Vis forfatter(e) (2019). CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing. Nucleic Acids Research (NAR). W171-W174.
Vis forfatter(e) (2019). Accurate analysis of genuine CRISPR editing events with ampliCan. Genome Research. 843-847.

Vis forfatter(e) (2018). Shoelaces: An interactive tool for ribosome profiling processing and visualization. BMC Genomics. 6 sider.

Vis forfatter(e) (2017). Ribosome signatures aid bacterial translation initiation site identification. BMC Biology. 1-14.
Vis forfatter(e) (2017). REPARATION: ribosome profiling assisted (re-) annotation of bacterial genomes. Nucleic Acids Research (NAR).

Vis forfatter(e) (2016). Internal guide RNA interactions interfere with Cas9-mediated cleavage. Nature Communications.
Vis forfatter(e) (2016). CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering. Nucleic Acids Research (NAR).

Vis forfatter(e) (2015). Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus. Cell reports. 875-883.

Vis forfatter(e) (2014). Nuclear stability and transcriptional directionality separate functionally distinct RNA species. Nature Communications.

Faglig foredrag

Leder

Vis forfatter(e) (2022). Nye CRISPR-metoder og mer presis presisjonsmedisin. Tidsskrift for Den norske legeforening.

Doktorgradsavhandling

Vis forfatter(e) (2019). Understanding translational landscapes through the footprints of ribosomes.

Poster

Vis forfatter(e) (2022). CRISPR-Cas9 T cell editing pipeline for Finnish founder diseases.

Vitenskapelig oversiktsartikkel/review

Vis forfatter(e) (2022). Small Open Reading Frames, How to Find Them and Determine Their Function. Frontiers in Genetics.

Vis forfatter(e) (2021). Transcript Isoform-Specific Estimation of Poly(A) Tail Length by Nanopore Sequencing of Native RNA. Methods in molecular biology. 543-567.

Discovering novel micropeptides

Pervasive translation

The function of long non-coding RNAs

Cas9 genome engineering

Kompetansefelt

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