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Eric Malcolm Thompsons bilde

Eric Malcolm Thompson

Professor
  • E-postEric.Thompson@uib.no
  • Telefon+47 55 58 43 46+47 404 80 441
  • Besøksadresse
    Thormølens gate 53 A/B
    5006 Bergen
  • Postadresse
    Postboks 7803
    5020 Bergen
Vitenskapelig artikkel
  • Vis forfatter(e) (2022). Evolution of CDK1 Paralog Specializations in a Lineage With Fast Developing Planktonic Embryos. Frontiers in Cell and Developmental Biology.
  • Vis forfatter(e) (2022). Alginate and tunicate nanocellulose composite microbeads – Preparation, characterization and cell encapsulation. Carbohydrate Polymers. 119284.
  • Vis forfatter(e) (2021). Mechanically reinforced, flexible, hydrophobic and uv impermeable starch-cellulose nanofibers (Cnf)-lignin composites with good barrier and thermal properties. Polymers. 1-14.
  • Vis forfatter(e) (2020). Evaluation of a eukaryote phylogenetic microarray for environmental monitoring of marine sediments. Marine Pollution Bulletin. 1-9.
  • Vis forfatter(e) (2020). Comparative Animal Mucomics: Inspiration for Functional Materials from Ubiquitous and Understudied Biopolymers. ACS Biomaterials Science and Engineering. 5377-5398.
  • Vis forfatter(e) (2019). Trans-splicing of mRNAs links gene transcription to translational control regulated by mTOR. BMC Genomics.
  • Vis forfatter(e) (2019). Switching of INCENP paralogs controls transitions in mitotic chromosomal passenger complex functions. Cell Cycle. 2006-2025.
  • Vis forfatter(e) (2018). Specialization of CDK1 and cyclin B paralog functions in a coenocystic mode of oogenic meiosis. Cell Cycle. 1425-1444.
  • Vis forfatter(e) (2018). Increased fitness of a key appendicularian zooplankton species under warmer, acidified seawater conditions. PLOS ONE. 1-19.
  • Vis forfatter(e) (2018). Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate. BMC Genomics. 12 sider.
  • Vis forfatter(e) (2018). Development of the house secreting epithelium, a major innovation of tunicate larvaceans, involves multiple homeodomain transcription factors. Developmental Biology. 117-126.
  • Vis forfatter(e) (2018). Development and testing of an 18S rRNA phylogenetic microarray for marine sediments. Journal of Microbiological Methods. 95-106.
  • Vis forfatter(e) (2018). A self‐cleaning biological filter: How appendicularians mechanically control particle adhesion and removal. Limnology and Oceanography. 927-938.
  • Vis forfatter(e) (2017). Viruses on the menu: The appendicularian Oikopleura dioica efficiently removes viruses from seawater. Limnology and Oceanography.
  • Vis forfatter(e) (2017). Viruses on the menu: The appendicularian Oikopleura dioica efficiently removes viruses from seawater. Limnology and Oceanography. S244-S253.
  • Vis forfatter(e) (2017). Sex-specific chromatin landscapes in an ultra-compact chordate genome. Epigenetics & Chromatin. 1-18.
  • Vis forfatter(e) (2017). Increased appendicularian zooplankton alter carbon cycling under warmer more acidified ocean conditions. Limnology and Oceanography. 1541-1551.
  • Vis forfatter(e) (2017). DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments. PLOS ONE. 1-18.
  • Vis forfatter(e) (2016). High-throughput metabarcoding of eukaryotic diversity for environmental monitoring of offshore oil-drilling activities. Molecular Ecology. 4392-4406.
  • Vis forfatter(e) (2015). Trans-splicing and operons in metazoans: Translational control in maternally regulated development and recovery from growth arrest. Molecular Biology and Evolution (MBE). 585-599.
  • Vis forfatter(e) (2015). Oikopleura dioica culturing made easy: A Low-Cost facility for an emerging animal model in EvoDevo. Genesis. 183-193.
  • Vis forfatter(e) (2015). Functional specialization of chordate cdk1 paralogs during oogenic meiosis. Cell Cycle. 880-893.
  • Vis forfatter(e) (2015). Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline. Nucleic Acids Research (NAR). 3701-3711.
  • Vis forfatter(e) (2015). Co-expressed Cyclin D variants cooperate to regulate proliferation of germline nuclei in a syncytium. Cell Cycle. 2129-2141.
  • Vis forfatter(e) (2015). A comparison of DNA extraction methods for biodiversity studies of eukaryotes in marine sediments. Aquatic Microbial Ecology. 15-25.
  • Vis forfatter(e) (2014). Lifespan extension in a semelparous chordate occurs via developmental growth arrest just prior to meiotic entry. PLOS ONE.
  • Vis forfatter(e) (2014). Future climate scenarios for a coastal productive planktonic food web resulting in microplankton phenology changes and decreased trophic transfer efficiency. PLOS ONE.
  • Vis forfatter(e) (2014). Characterization of the 18s rRNA gene for designing universal eukaryote specific primers. PLOS ONE.
  • Vis forfatter(e) (2013). Response of the pelagic tunicate appendicularian, Oikopleura dioica to controlled simulations of a strong bloom condition: A bottom-up perspective. Limnology and Oceanography. 215-226.
  • Vis forfatter(e) (2013). OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica. Nucleic Acids Research (NAR). D845-D853.
  • Vis forfatter(e) (2013). Effects of ocean acidification, temperature and nutrient regimes on the appendicularian Oikopleura dioica: a mesocosm study. Marine Biology. 2175-2187.
  • Vis forfatter(e) (2012). The evolving proteome of a complex extracellular matrix, the Oikopleura House. PLOS ONE. 15 sider.
  • Vis forfatter(e) (2012). Expansion of cyclin D and CDK1 paralogs in Oikopleura dioica, a chordate employing diverse cell cycle variants. Molecular Biology and Evolution (MBE). 487-502.
  • Vis forfatter(e) (2012). Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics. BMC Genomics. 17 sider.
  • Vis forfatter(e) (2011). Histone variant innovation in a rapidly evolving chordate lineage. BMC Evolutionary Biology. 18 sider.
  • Vis forfatter(e) (2011). Cytoskeleton-mediated templating of complex cellulose-scaffolded extracellular structure and its association with oikosins in the urochordate Oikopleura. Cellular and Molecular Life Sciences (CMLS). 1611-1622.
  • Vis forfatter(e) (2010). Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate. Science. 1381-1385.
  • Vis forfatter(e) (2010). Functional specialization of cellulose synthase genes of prokaryotic origin in chordate larvaceans. Development. 1483-1492.
  • Vis forfatter(e) (2009). Regulation of filter-feeding house components in response to varying food regimes in the appendicularian, Oikopleura dioica. Journal of Plankton Research. 1453-1463.
  • Vis forfatter(e) (2009). Culture optimization for the emergent zooplanktonic model organism Oikopleura dioica. Journal of Plankton Research. 359-370.
  • Vis forfatter(e) (2008). Oocyte selection is concurrent with meiosis resumption in the coenocystic oogenesis of Oikopleura. Developmental Biology. 266-276.
  • Vis forfatter(e) (2008). Altered miRNA repertoire in the simplified chordate, Oikopleura dioica. Molecular Biology and Evolution (MBE). 1067-1080.
  • Vis forfatter(e) (2007). The cytoskeleton organizes germ nuclei with divergent fates and asynchronous cycles in a common cytoplasm during oogenesis in the chordate Oikopleura. Developmental Biology. 577-590.
  • Vis forfatter(e) (2007). The Oikopleura coenocyst, a unique chordate germ cell permitting rapid, extensive modulation of oocyte production. Developmental Biology. 591-600.
  • Vis forfatter(e) (2007). Rapidly evolving lamins in a chordate, Oikopleura dioica, with unusual nuclear architecture. Gene. 159-169.
  • Vis forfatter(e) (2007). Phosphorylation of the histone H3.3 variant in mitosis and meiosis of the urochordate Oikopleura dioica. Chromosome Research. 189-201.
  • Vis forfatter(e) (2007). Molecular quantification of differential ingestion and particle trapping rates by the appendicularian Oikopleura dioica as a function of prey size and shape. Limnology and Oceanography. 416-427.
  • Vis forfatter(e) (2007). Endostyle cell recruitment as a frame of reference for development and growth in the urochordate Oikopleura dioica. The Biological Bulletin. 325-334.
  • Vis forfatter(e) (2007). Conserved patterns of nuclear compartmentalization are not observed in the chordate Oikopleura. Biology of the Cell. 273-287.
  • Vis forfatter(e) (2006). Integrating developmental clocking and growth in a life-history model for the planktonic chordate Oikopleura dioica. Marine Ecology Progress Series. 81-88.
  • Vis forfatter(e) (2006). Comparative organization of follicle, accessory cells and spawning anlagen in dynamic semelparous clutch manipulators, the urochordate Oikopleuridae. Biology of the Cell. 389-401.
  • Vis forfatter(e) (2006). A model of developmental time applied to planktonic embryos. Marine Ecology Progress Series. 75-80.
  • Vis forfatter(e) (2005). Variable fatty acid composition of the pelagic appendicularian Oikopleura dioica in response to dietary quality and quantity. Marine Ecology Progress Series. 165-176.
  • Vis forfatter(e) (2005). Plasticity of histone modifications across the invertebrate to vertebrate transition: histone H3 lysine 4 trimethylation in heterochromatin. Chromosome Research. 57-72.
  • Vis forfatter(e) (2005). Histone H4 posttranslational modifications in chordate mitotic and endoreduplicative cell cycles. Journal of Cellular Biochemistry. 885-901.
  • Vis forfatter(e) (2004). Spliced-leader RNA trans splicing in a chordate, Oikopleura dioica, with a compact genome. Molecular and Cellular Biology. 7795-7805.
  • Vis forfatter(e) (2004). Histone mRNAs do not accumulate during S phase of either mitotic or endoreduplicative cycles in the chordate Oikopleura dioica. Molecular and Cellular Biology. 5391-5403.
  • Vis forfatter(e) (2002). Patterning through differential endoreduplication in epithelial organogenesis of the chordate, Oikopleura dioica. Developmental Biology. 59-71.
  • Vis forfatter(e) (2002). Histone gene complement, variant expression, and mRNA processing in a urochordate Oikopleura dioica that undergoes extensive polyploidization. Molecular Biology and Evolution (MBE). 2247-2260.
  • Vis forfatter(e) (2001). Molecular patterning of the oikoplastic epithelium of the larvacean tunicate Oikopleura dioica. Journal of Biological Chemistry. 20624-20632.
  • Vis forfatter(e) (2001). Miniature genome in the marine chordate Oikopleura dioica. Science. 2506.
  • Vis forfatter(e) (2001). Diverse genes expressed in distinct regions of the trunk epithelium define a monolayer cellular template for construction of the Oikopleurid house. Developmental Biology. 260-273.
  • Vis forfatter(e) (2000). Somatic linker histone H1 is present throughout mouse embryogenesis and is not replaced by variant H1 degrees. Journal of Cell Science. 2897-2907.
Faglig foredrag
  • Vis forfatter(e) (2015). GELATINOUS ZOOPLANKTON IN CHANGING OCEANS: THE UROCHORDATE, OIKOPLEURA DIOICA, IN THE CONTEXT OF OCEANIC WARMING AND PH VARIATION.
  • Vis forfatter(e) (2013). Effects of ocean acidification and temperature on marine zooplankton: A mesocosm study.
Vitenskapelig foredrag
  • Vis forfatter(e) (2018). Ongoing activities with eDNA as a monitoring tool in high-latitude marine ecosystems.
  • Vis forfatter(e) (2016). Role of appendicularians in aquatic viral ecology: particle trapping, ingestion and consequences for the marine microbial food web.
  • Vis forfatter(e) (2009). From barcodes to ecosystem functioning - a peek into the near future.
Leder
  • Vis forfatter(e) (2008). Euro chordates: Ascidian community swims ahead. The 4th international tunicate meeting in villefranche sur mer. Developmental Dynamics. 1207-1213.
Doktorgradsavhandling
  • Vis forfatter(e) (2018). Roles of M-phase cell cycle regulatory paralogs in the urochordate Oikopleura dioica.
  • Vis forfatter(e) (2017). Response of the gelatinous zooplankton Oikopleura dioica to warmer, acidified seawater conditions.
  • Vis forfatter(e) (2016). DNA-based Methods for Environmental Monitoring of Marine Sediments .
  • Vis forfatter(e) (2015). Lifespan extension in a semelparous chordate Oikopleura dioica via developmental growth arrest: Roles of Target of Rapamycin (TOR) signaling and D cyclins.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
  • Vis forfatter(e) (2004). Patterning and Organisation of the House Secreting Epithelium of Oikopleura dioica. 24 sider.
Poster
  • Vis forfatter(e) (2015). High throughput sequencing technology for environmental monitoring of eukaryptic biodiversity.
  • Vis forfatter(e) (2015). Development and evaluation of microarrays to investigate eukaryotic diversity in marine sediments.
Vitenskapelig oversiktsartikkel/review
  • Vis forfatter(e) (2012). A unified phylogeny-based nomenclature for histone variants. Epigenetics & Chromatin. 19 sider.

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