Hjem
Inge Jonassens bilde

Inge Jonassen

Professor, også leder av Computational Biology Unit
  • E-postInge.Jonassen@uib.no
  • Telefon+47 55 58 47 13+47 905 24 316
  • Besøksadresse
    Høyteknologisenteret i Bergen
    5020 Bergen
    Rom 
    5103
  • Postadresse
    Postboks 7803
    5020 Bergen

Min forskningsfelt er bioinformatikk - utvikling og bruk av informatikk-metoder på analyse av molekylærbiologiske data. Jeg er interessert i metoder for oppdaging av mønstre, data-analyse, algoritmer og maskinlæring anvendt på molekylærbiologiske data. Min forskning inkluderer tett samarbeid med eksperimentelle grupper innen for ulike biologiske og biomedisinske felt. Jeg arbeider med analyse av ulike typer data slik som DNA-sekvenser (og genomer), proteiners sekvenser og struktur, gen-uttrykkingsdata og data produsert av høykapasitets-teknologier innen for eksempel sekvensering. Gruppen min er også engasjert i utvikling og bruk av metoder for integrasjon av data og verktøy innen bioinformatikk.

Jeg underviser primært kurs innen feltet bioinformatikk, men har også undervist blant annet brukerkurs i informatikk og kurs innen databaser. Jeg leder en nasjonal forskerskole for bioinformatikk, biostatistikk og system-biologi (NORBIS).

  • Goksøyr, Anders; Alendal, Guttorm; Aranguren-Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Eide, Marta; Fallahi, Shirin; Goksøyr, Siri Øfsthus; Hanna, Eileen Marie; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Lille-Langøy, Roger; Lyche, Jan Ludvig; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Stegeman, John J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre. 2019. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR.
  • Goksøyr, Anders; Alendal, Guttorm; Aranguren-Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Denslow, Nancy; Eide, Marta; Fallahi, Shirin; Goksøyr, Siri Øfsthus; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hanna, Eileen Marie; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Lille-Langøy, Roger; Lyche, Jan Ludvig; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre. 2019. dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR.
  • Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Reboa, Anna; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2019. Toxicogenomic responses in Atlantic cod (Gadus morhua) after treatment with selected environmental contaminants in vivo and ex vivo.
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders. 2019. The chemical defensome of Atlantic cod (Gadus morhua).
  • Ison, Jon; Ienasescu, Hans-Ioan; Chmura, Piotr; Rydza, Emil; Ménager, Hervé; Kalaš, Matúš; Schwämmle, Veit; Grüning, Björn A.; Beard, Niall; Lopez, Rodrigo; Duvaud, Severine; Stockinger, Heinz; Persson, Bengt; Svobodová Vařeková, Radka; Raček, Tomáš; Vondrášek, Jiří; Peterson, Hedi; Salumets, Ahto; Jonassen, Inge; et al., +18 authors (total 37). 2019. The bio.tools registry of software tools and data resources for the life sciences. Genome Biology.
  • Zhang, Xiaokang; Eide, Marta; Karlsen, Odd Andre; Hanna, Eileen Marie; Brun, Morten; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders. 2019. THE CHEMICAL DEFENSOME OF ATLANTIC COD (GADUS MORHUA): HOW DOES IT DIFFER FROM DEFENSOME NETWORKS IN OTHER TELEOST SPECIES?
  • Nielsen, Rune; Xue, Yaxin; Jonassen, Inge; Haaland, Ingvild; Kommedal, Øyvind; Wiker, Harald G; Drengenes, Christine; Bakke, Per S.; Eagan, Thomas M. 2019. Repeated bronchoscopy examination of the airway microbiome. European Respiratory Journal.
  • Zhang, Xiaokang; Jonassen, Inge. 2019. RASflow: An Easy-to-use RNA-Seq Analysis Workflow.
  • Romanowska, Julia; Haaland, Øystein Ariansen; Jugessur, Astanand; Gjerdevik, Miriam; Xu, Zongli; Taylor, Jack A.; Wilcox, Allen J; Jonassen, Inge; Lie, Rolv T.; Gjessing, Håkon K. 2019. Gene-methylation interactions: Discovering region-wise DNA methylation levels that modify SNP-associated disease risk. bioRxiv - the preprint server for biology.
  • Rye, Morten Beck; Nygård, Ståle; Drabløs, Finn; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder; Hovig, Eivind; Jonassen, Inge. 2019. ELIXIR.NO - The national infrastructure of bioinformatics.
  • Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Reboa, Anna; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2019. EFFECTS OF SELECTED ENVIRONMENTAL ESTROGENS ON EXPRESSION OF FIBROBLAST GROWTH FACTOR SIGNALING PATHWAY GENES IN THE LIVER OF ATLANTIC COD (GADUS MORHUA) IN VIVO AND EX VIVO.
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Goldstone, Jared V.; Stegeman, John J.; Jonassen, Inge; Goksøyr, Anders. 2019. Chemical warfare in the marine environment.
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Goldstone, Jared V.; Stegeman, John J.; Jonassen, Inge; Goksøyr, Anders. 2019. Chemical warfare in the aquatic environment - The chemical defensome networks of model fish species.
  • Xue, Yaxin; Jonassen, Inge; Øvreås, Lise; Tas, Neslihan. 2019. Bacterial and archaeal metagenome-assembled genome sequences from Svalbard permafrost. Microbiology Resource Announcements (MRA). 1-3.
  • Zhang, Xiaokang; Jonassen, Inge. 2019. An Ensemble Feature Selection Framework Integrating Stability. 7 sider.
  • Zhang, Xiaokang; Jonassen, Inge. 2019. An Ensemble Feature Selection Framework Integrating Stability.
  • Hanna, Eileen Marie; Zhang, Xiaokang; Eide, Marta; Yadetie, Fekadu; Blaser, Nello; Alendal, Guttorm; Goksøyr, Anders; Jonassen, Inge. 2019. A draft metabolic reconstruction of Atlantic cod (Gadus morhua) liver: how to and what for?
  • Hanna, Eileen Marie; Zhang, Xiaokang; Fallahi, Shirin; Eide, Marta; Yadetie, Fekadu; Blaser, Nello; Alendal, Guttorm; Goksøyr, Anders; Jonassen, Inge. 2019. A draft metabolic reconstruction of Atlantic cod (Gadus morhua) liver .
  • Zhang, Xiaokang; Jonassen, Inge. 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-treated Atlantic Cod (Gadus morhua) Liver.
  • Zhang, Xiaokang; Jonassen, Inge. 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver. Communications in Computer and Information Science. 114-123.
  • Zhang, Xiaokang; Jonassen, Inge. 2019. A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver. 10 sider.
  • Karlsen, Odd Andre; Sôderstrôm, Sofie; Goksøyr, Siri Øfsthus; Aranguren, Libe; Lille-Langøy, Roger; Eide, Marta; Zhang, Xiaokang; Jonassen, Inge; Yadetie, Fekadu; Goksøyr, Anders. 2018. The nuclear receptor complement of Atlantic cod (Gadus morhua) as potential targets for endocrine disrupting compounds.
  • Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Aranguren Abadía, Libe; Eide, Marta; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre. 2018. RNA-seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol.
  • Hanna, Eileen Marie; Blaser, Nello; Brun, Morten; Yadetie, Fekadu; Goksøyr, Anders; Jonassen, Inge. 2018. Persistent homology and network analyses reveal key gene interactions affected by environmental pollutants in Atlantic cod.
  • Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Jonassen, Inge. 2018. Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research. 15 sider.
  • Zhang, Xiaokang; Eide, Marta; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders. 2018. Modelling the chemical defensome networks --- a dynamic visualisation of the involved genes and interactions in two fish species and human.
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders. 2018. Modelling the chemical defensome network - a dynamic visualisation of the involved genes and pathways in two fish species and humans .
  • Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders. 2018. Modelling The Chemical Defensome Networks - A Comparative Dynamic Visualisation Of The Involved Genes And Interactions In Two Fish Species And Humans.
  • Dondrup, Michael; Zhang, Wei; Nilsen, Frank; Jonassen, Inge. 2018. LiceBase – genom-data som kan bidra til kontroll av lakselus.
  • Zhang, Xiaokang; Jonassen, Inge. 2018. EFSIS: Ensemble Feature Selection Integrating Stability.

Se fullstendig oversikt over publikasjoner i CRIStin.

Se også min profil i google scholar: https://scholar.google.com/citations?user=RqvFRN4AAAAJ&hl=no&oi=ao