Hjem
Matus Kalass bilde

Matus Kalas

Postdoktor
  • E-postMatus.Kalas@uib.no
  • Besøksadresse
    HIB - Thormøhlensgt. 55
  • Postadresse
    Postboks 7803
    5020 Bergen
Tidsskriftartikler
  • Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Jonassen, Inge. 2018. Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research. 7:968. 15 sider. doi: 10.5256/f1000research.16472.r35600
  • Doppelt-Azeroual, Olivia; Mareuil, Fabien; Deveaud, Eric; Kalaš, Matúš; Soranzo, Nicole; van den Beek, Marius; Grüning, Björn; Ison, Jon; Ménager, Hervé. 2017. ReGaTE: Registration of galaxy tools in Elixir. GigaScience. 6: 1-4. doi: 10.1093/gigascience/gix022
  • Möller, Steffen; Prescott, Stuart W.; Wirzenius, Lars; Reinholdtsen, Petter; Chapman, Brad; Prins, Pjotr; Soiland-Reyes, Stian; Klötzl, Fabian; Bagnacani, Andrea; Kalaš, Matúš; Tille, Andreas; Crusoe, Michael R. 2017. Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis. Data Science and Engineering. 2: 232-244. Publisert 2017-11-16. doi: 10.1007/s41019-017-0050-4
  • Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kalaš, Matúš; Rydza, Emil; Chmura, Piotr; Anthon, Christian; Beard, Niall; Berka, Karel; Bolser, Dan; Booth, Tim; Bretaudeau, Anthony; Brezovsky, Jan; Casadio, Rita; Cesareni, Gianni; Coppens, Frederik; Cornell, Michael; Cuccuru, Gianmauro; Davidsen, Kristian; Della Vedova, Gianluca; Dogan, Tunca; Doppelt-Azeroual, Olivia; Emery, Laura; Gasteiger, Elisabeth; Gatter, Thomas; Goldberg, Tatyana; Grosjean, Marie; Gruuing, Björn; Helmer-Citterich, Manuela; Ienasescu, Hans; Ioannidis, Vassilios; Jespersen, Martin Closter; Jimenez, Rafael; Juty, Nick; Juvan, Peter; Koch, Maximilian; Laibe, Camille; Li, Jing-Woei; Licata, Luana; Mareuil, Fabien; Micetic, Ivan; Friborg, Rune Møllegaard; Moretti, Sebastien; Morris, Chris; Möller, Steffen; Nenadic, Aleksandra; Peterson, Hedi; Profiti, Giuseppe; Rice, Peter; Romano, Paolo; Roncaglia, Paola; Saidi, Rabie; Schafferhans, Andrea; Schwämmle, Veit; Smith, Callum; Sperotto, Maria Maddalena; Stockinger, Heinz; Vařeková, Radka Svobodová; Tosatto, Silvio C.E.; De La Torre, Victor; Uva, Paolo; Via, Allegra; Yachdav, Guy; Zambelli, Federico; Vriend, Gert; Rost, Burkhard; Parkinson, Helen; Løngreen, Peter; Brunak, Søren. 2016. Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research. 44: D38-D47. Publisert 2016-01-04. doi: 10.1093/nar/gkv1116
  • Ménager, Hervé; Kalaš, Matúš; Rapacki, Kristoffer; Ison, Jon. 2016. Using registries to integrate bioinformatics tools and services into workbench environments. International Journal on Software Tools for Technology Transfer (STTT). 16: 581-586. doi: 10.1007/s10009-015-0392-z
  • Kaján, László; Hopf, Thomas A.; Kalaš, Matúš; Marks, Debora S.; Rost, Burkhard. 2014. FreeContact: Fast and free software for protein contact prediction from residue co-evolution. BMC Bioinformatics. 15. doi: 10.1186/1471-2105-15-85
  • Katayama, Toshiaki; Wilkinson, Mark; ..., ...; Kalaš, Matúš; et al., 85 authors. 2014. BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. Journal of Biomedical Semantics. 5: 5. Publisert 2014-02-05. doi: 10.1186/2041-1480-5-5
  • Möller, Steffen; Afgan, Enis; Banck, Michael; Bonnal, Raoul J.P.; Booth, Timothy; Chilton, John; Cock, Peter J.A.; Gumbel, Markus; Harris, Nomi; Holland, Richard; Kalaš, Matúš; Kaján, László; Kibukawa, Eri; Powel, David R.; Prins, Pjotr; Quinn, Jacqueline; Sallou, Olivier; Strozzi, Francesco; Seemann, Torsten; Sloggett, Clare; Soiland-Reyes, Stian; Spooner, William; Steinbiss, Sascha; Tille, Andreas; Travis, Anthony J.; Guimera, Roman Valls; Katayama, Toshiaki; Chapman, Brad A. 2014. Community-driven development for computational biology at Sprints, Hackathons and Codefests. BMC Bioinformatics. 15. doi: 10.1186/1471-2105-15-S14-S7
  • Ison, Jon; Kalaš, Matúš; Jonassen, Inge; Bolser, Dan; Uludag, Mahmut; McWilliam, Hamish; Malone, James; Lopez, Rodrigo; Pettifer, Steve; Rice, Peter. 2013. EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. Bioinformatics. 29: 1325-1332. doi: 10.1093/bioinformatics/btt113
  • Klingström, Tomas; Soldatova, Larissa; Stevens, Robert; Roos, T. Erik; Swertz, Morris A.; Müller, Kristian M.; Kalaš, Matúš; Lambrix, Patrick; Taussig, Michael J.; Litton, Jan-Eric; Landegren, Ulf; Bongcam-Rudloff, Erik. 2013. Workshop on laboratory protocol standards for the molecular methods database. New Biotechnology. 30: 109-113. doi: 10.1016/j.nbt.2012.05.019
  • Möller, Steffen; Afgan, Enis; Banck, Michael; Cock, Peter JA; Kalaš, Matúš; Kaján, László; Prins, Pjotr; Quinn, Jacqueline; Sallou, Olivier; Strozzi, Francesco; Seeman, Torsten; Tille, Andreas; Valls Guimera, Roman; Katayama, Toshiaki; Chapman, Brad. 2013. Sprints, Hackathons and Codefests as community gluons in computational biology. EMBnet.journal. 19: 40-42. Publisert 2013-10-14.
  • Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard; Paulsen, Jonas; Rydbeck, Halfdan; Trengereid, Kai; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Kalaš, Matúš; Lien, Tonje Gulbrandsen; Rye, Morten Beck; Frigessi, Arnoldo; Hovig, Johannes Eivind. 2013. The Genomic HyperBrowser: an analysis web server for genome-scale data. Nucleic Acids Research. 41: W133-W141. doi: 10.1093/nar/gkt342
  • Gundersen, Sveinung; Kalaš, Matúš; Abul, Osman; Frigessi, Arnoldo; Hovig, Eivind; Sandve, Geir Kjetil. 2011. Identifying elemental genomic track types and representing them uniformly. BMC Bioinformatics. 12. Publisert 2011-12-30. doi: 10.1186/1471-2105-12-494
  • Kalas, Matus; Puntervoll, Pål; Joseph, Alexandre; Bartaševičiūtė, Edita; Töpfer, Armin; Venkataraman, Prabakar; Pettifer, Steve; Bryne, Jan Christian; Ison, Jon; Blanchet, Christophe; Rapacki, Kristoffer; Jonassen, Inge. 2010. BioXSD: the common data-exchange format for everyday bioinformatics web services. Bioinformatics. 26: i540-i546. doi: 10.1093/bioinformatics/btq391
  • Pettifer, Steve; Ison, Jon; Kalaš, Matúš; Thorne, David; McDermott, Philip; Jonassen, Inge; Ali, Liaquat; Fernandez, Jose M; Rodriguez, Jose M; Pisano, David G; Blanchet, Christophe; Uludag, Mahmut; Rice, Peter; Bartaseviciute, Edita; Rapacki, Kristoffer; Hekkelman, Maarten; Sand, Olivier; Stockinger, Heinz; Clegg, Andrew B; Bongcam-Rudloff, Eric; Salzemann, Jean; Breton, Vincent; Attwood, Teresa K; Cameron, Graham; Vriend, Gert. 2010. The EMBRACE web service collection. Nucleic Acids Research. 38: W683-W688. doi: 10.1093/nar/gkq297
Rapporter/avhandlinger
  • Kalaš, Matúš. 2015. Efforts towards accessible and reliable bioinformatics. University of Bergen, Bergen. 110 sider.

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