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Tomasz Krzysztof Stokowys bilde

Tomasz Krzysztof Stokowy

Senioringeniør
  • E-postTomasz.Stokowy@uib.no
  • Telefon+47 486 14 219
  • Besøksadresse
    Kalfarveien 31
    5018 Bergen
  • Postadresse
    Postboks 7800
    5020 Bergen

Bioinformatics, medical genomics

Vitenskapelig artikkel
  • Vis forfatter(e) (2021). imPlatelet classifier: image-converted RNA biomarker profiles enable blood-based cancer diagnostics. Molecular Oncology. 2688-2701.
  • Vis forfatter(e) (2021). Transcriptomic landscape of blood platelets in healthy donors. Scientific Reports.
  • Vis forfatter(e) (2021). Reduced expression of innate immunity-related genes in lymph node metastases of luminal breast cancer patients. Scientific Reports.
  • Vis forfatter(e) (2021). Reduced expression of OXPHOS and DNA damage genes is linked to protection from microvascular complications in long-term type 1 diabetes: the PROLONG study. Scientific Reports.
  • Vis forfatter(e) (2021). Phosphatidylserine receptors enhance SARS-CoV-2 infection. PLoS Pathogens.
  • Vis forfatter(e) (2021). Patient-derived organoids reflect the genetic profile of endometrial tumors and predict patient prognosis. Communications Medicine. 1-14.
  • Vis forfatter(e) (2021). Heat shock factor 1 (Hsf1) cooperates with estrogen receptor α (erα) in the regulation of estrogen action in breast cancer cells. eLIFE. 1-71.
  • Vis forfatter(e) (2021). Diagnostic accuracy of liquid biopsy in endometrial cancer. Cancers.
  • Vis forfatter(e) (2020). Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia. Cancers.
  • Vis forfatter(e) (2020). Familial infertility (Azoospermia and cryptozoospermia) in two brothers—carriers of t(1;7) complex chromosomal rearrangement (ccr): Molecular cytogenetic analysis. International Journal of Molecular Sciences. 1-18.
  • Vis forfatter(e) (2020). Clinical features and molecular genetics of patients with ABCA4-retinal dystrophies. Acta Ophthalmologica. 1-14.
  • Vis forfatter(e) (2020). Characterization of CEL-DUP2: Complete duplication of the carboxyl ester lipase gene is unlikely to influence risk of chronic pancreatitis. Pancreatology (Print). 377-384.
  • Vis forfatter(e) (2020). Accuracy and efficiency of germline variant calling pipelines for human genome data. Scientific Reports. 1-12.
  • Vis forfatter(e) (2019). The role of NF-κB transcription factor in cellular response to ionizing radiation. Biopolymers and Cell. 183.
  • Vis forfatter(e) (2019). The Discovery of a LEMD2-Associated Nuclear Envelopathy with Early Progeroid Appearance Suggests Advanced Applications for AI-Driven Facial Phenotyping. American Journal of Human Genetics. 749-757.
  • Vis forfatter(e) (2019). Spectrum of epithelial-mesenchymal transition phenotypes in circulating tumour cells from early breast cancer patients. Cancers.
  • Vis forfatter(e) (2019). Proteome and phosphoproteome changes associated with prognosis in acute myeloid leukemia. bioRxiv - the preprint server for biology.
  • Vis forfatter(e) (2019). Predictive value of angiogenic proteins in patients with metastatic melanoma treated with bevacizumab monotherapy. The journal of pathology. Clinical research. 53-62.
  • Vis forfatter(e) (2019). Novel mutations segregating with complete androgen insensitivity syndrome and their molecular characteristics. International Journal of Molecular Sciences.
  • Vis forfatter(e) (2019). NF-kappa B signaling-related signatures are connected with the mesenchymal phenotype of circulating tumor cells in non-metastatic breast cancer. Cancers. 1-12.
  • Vis forfatter(e) (2019). Holocene mass movements in west and mid-Norwegian fjords and lakes. Marine Geology. 192-212.
  • Vis forfatter(e) (2019). Genetic variation in metronidazole metabolism and oxidative stress pathways in clinical giardia lamblia assemblage A and B isolates. Infection and Drug Resistance. 1221-1235.
  • Vis forfatter(e) (2019). Exome sequencing in routine diagnostics: A generic test for 254 patients with primary immunodeficiencies. Genome Medicine. 1-15.
  • Vis forfatter(e) (2019). 17β-estradiol activates HSF1 via MAPK signaling in erα-positive breast cancer cells. Cancers. 1-14.
  • Vis forfatter(e) (2018). Screening for viral nucleic acids in vestibular schwannoma. Journal of Neurovirology. 730-737.
  • Vis forfatter(e) (2018). SPEN protein expression and interactions with chromatin in mouse testicular cells. Reproduction. 195-206.
  • Vis forfatter(e) (2018). RRAD, IL4I1, CDKN1A, and SERPINE1 genes are potentially co-regulated by NF-?B and p53 transcription factors in cells exposed to high doses of ionizing radiation. BMC Genomics. 813.
  • Vis forfatter(e) (2018). Pro-inflammatory cytokine and high doses of ionizing radiation have similar effects on the expression of NF-kappaB-dependent genes. Cellular Signalling. 23-31.
  • Vis forfatter(e) (2018). MiR-192 and miR-662 enhance chemoresistance and invasiveness of squamous cell lung carcinoma. Lung Cancer. 111-118.
  • Vis forfatter(e) (2018). Genetic variation in 117 myelination-related genes in schizophrenia: Replication of association to lipid biosynthesis genes. Scientific Reports. 1-8.
  • Vis forfatter(e) (2018). Comparison of three variant callers for human whole genome sequencing. Scientific Reports. 1-6.
  • Vis forfatter(e) (2018). Blood steroids are associated with prognosis and fat distribution in endometrial cancer. Gynecologic Oncology. 46-52.
  • Vis forfatter(e) (2018). Aggressive Phenotype of Cells Disseminated via Hematogenous and Lymphatic Route in Breast Cancer Patients. Translational Oncology. 722-731.
  • Vis forfatter(e) (2018). A tyrosine kinase-activating variant Asn666Ser in PDGFRB causes a progeria-like condition in the severe end of Penttinen syndrome. European Journal of Human Genetics.
  • Vis forfatter(e) (2017). Sensitivity of next-generation sequencing metagenomic analysis for detection of RNA and DNA viruses in cerebrospinal fluid: The confounding effect of background contamination. Advances in Experimental Medicine and Biology. 53-62.
  • Vis forfatter(e) (2017). Gene expression (mRNA) markers for differentiating between malignant and benign follicular thyroid tumours. International Journal of Molecular Sciences.
  • Vis forfatter(e) (2017). Duplicated enhancer region increases expression of CTSB and segregates with keratolytic winter erythema in South African and Norwegian families. American Journal of Human Genetics. 737-750.
  • Vis forfatter(e) (2017). Differences in the transcriptome of medullary thyroid cancer regarding the status and type of RET gene mutations. Scientific Reports. 1-11.
  • Vis forfatter(e) (2017). BRCA testing by single-molecule molecular inversion probes. Clinical Chemistry. 503-512.
  • Vis forfatter(e) (2016). Two-miRNA classifiers differentiate mutation-negative follicular thyroid carcinomas and follicular thyroid adenomas in fine needle aspirations with high specificity. Endocrine. 440-447.
  • Vis forfatter(e) (2016). Somatic mutation profiling of follicular thyroid cancer by next generation sequencing. Molecular and Cellular Endocrinology. 130-137.
  • Vis forfatter(e) (2016). RareVariantVis: New tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data. Bioinformatics. 3018-3020.
  • Vis forfatter(e) (2016). Differences in miRNA and mRNA Profile of Papillary Thyroid Cancer Variants. International Journal of Endocrinology. 1-10.
  • Vis forfatter(e) (2015). Cross talk between cytokine and hyperthermia-induced pathways: identification of different subsets of NF-κB-dependent genes regulated by TNFα and heat shock. Molecular Genetics and Genomics. 1979-1990.
  • Vis forfatter(e) (2015). A two miRNA classifier differentiates follicular thyroid carcinomas from follicular thyroid adenomas. Molecular and Cellular Endocrinology. 43-49.
  • Vis forfatter(e) (2014). Crosstalk between HSF1 and HSF2 during the heat shock response in mouse testes. International Journal of Biochemistry and Cell Biology. 76-83.
Short communication
  • Vis forfatter(e) (2015). Next-generation sequencing (NGS) in the identification of encephalitis-causing viruses: Unexpected detection of human herpesvirus 1 while searching for RNA pathogens. Journal of Virological Methods. 1-6.

Se fullstendig oversikt over publikasjoner i CRIStin.

http://www.ncbi.nlm.nih.gov/pubmed/?term=Stokowy+T

Deep sequencing in biomedicine;

NORMENT - Norwegian Center for Mental Disorders Research;

Discovery of causative variants in rare genetic disorders;