Hjem
Tomasz Stokowys bilde

Tomasz Stokowy

Senioringeniør
  • E-postTomasz.Stokowy@uib.no
  • Telefon+47 486 14 219
  • Besøksadresse
    Haukeland universitetssykehus, Laboratoriebygget
  • Postadresse
    Postboks 7804
    5020 Bergen

Bioinformatics, medical genomics

Vitenskapelig artikkel
  • Janus, Patryk; Szoltysek, Katarzyna; Zajac, Gracjana; Widlak, Wieslawa; Stokowy, Tomasz; Wojtas, Bartosz; Widlak, Piotr. 2019. The role of NF-κB transcription factor in cellular response to ionizing radiation. Biopolymers and Cell. 183.
  • Marbach, Felix; Rustad, Cecilie; Rieß, Angelika; Đukić, Dejan; Hsieh, Tzung-Chien; Jobani, Itanar; Prescott, Trine; Bevot, Andrea; Erger, Florian; Houge, Gunnar; Redfors, Eva Maria Cecil; Altmueller, Janine; Stokowy, Tomasz; Gilissen, Christian; Kubisch, Christian; Scarano, Emanuela; Mazzanti, Laura; Fiskerstrand, Torunn v/dødsbo; Krawitz, Peter M.; Lessel, Davor; Netzer, Christian. 2019. The Discovery of a LEMD2-Associated Nuclear Envelopathy with Early Progeroid Appearance Suggests Advanced Applications for AI-Driven Facial Phenotyping. American Journal of Human Genetics. 749-757.
  • Markiewicz, Aleksandra; Topa, Justyna; Nagel, Anna; Skokowski, Jaroslaw; Seroczynska, Barbara; Stokowy, Tomasz; Welnicka-Jaskiewicz, Marzena; Zaczek, Anna J. 2019. Spectrum of epithelial-mesenchymal transition phenotypes in circulating tumour cells from early breast cancer patients. Cancers.
  • Aasebø, Elise; Berven, Frode; Bartaula-Brevik, Sushma; Stokowy, Tomasz; Hovland, Randi; Vaudel, Marc; Døskeland, Stein Ove; Mc Cormack, Emmet; Batth, Tanveer S; Olsen, Jesper V; Bruserud, Øystein; Selheim, Frode; Hernandez-Valladares, Maria. 2019. Proteome and phosphoproteome changes associated with prognosis in acute myeloid leukemia. bioRxiv - the preprint server for biology.
  • Schuster, Cornelia; Akslen, Lars A.; Stokowy, Tomasz; Straume, Oddbjørn. 2019. Predictive value of angiogenic proteins in patients with metastatic melanoma treated with bevacizumab monotherapy. The journal of pathology. Clinical research. 53-62.
  • Malcher, Agnieszka; Jedrzejczak, Piotr; Stokowy, Tomasz; Monem, Soroosh; Nowicka-Bauer, Karolina; Zimna, Agnieszka; Czyzyk, Adam; Maciejewska-Jeske, Marzena; Meczekalski, Blazej; Bednarek-Rajewska, Katarzyna; Wozniak, Aldona; Rozwadowska, Natalia; Kurpisz, Maciej. 2019. Novel mutations segregating with complete androgen insensitivity syndrome and their molecular characteristics. International Journal of Molecular Sciences.
  • Popęda, Marta; Stokowy, Tomasz; Bednarz-Knoll, Natalia; Jurek, Anna; Niemira, Magdalena; Bielska, Agnieszka; Krętowski, Adam Jacek; Kalinowski, Leszek; Szade, Jolanta; Markiewicz, Aleksandra; Żaczek, Anna J. 2019. NF-kappa B signaling-related signatures are connected with the mesenchymal phenotype of circulating tumor cells in non-metastatic breast cancer. Cancers. 1-12.
  • Bellwald, Benjamin; Hjelstuen, Berit Oline Blihovde; Sejrup, Hans Petter; Stokowy, Tomasz; Kuvås, Jomar. 2019. Holocene mass movements in west and mid-Norwegian fjords and lakes. Marine Geology. 192-212.
  • Saghaug, Christina Skår; Klotz, Christian; Kallio, Juha Pekka; Brattbakk, Hans-Richard; Stokowy, Tomasz; Aebischer, Toni; Kursula, Inari; Langeland, Nina; Hanevik, Kurt. 2019. Genetic variation in metronidazole metabolism and oxidative stress pathways in clinical giardia lamblia assemblage A and B isolates. Infection and Drug Resistance. 1221-1235.
  • Arts, Peer; Simons, Annet; Alzahrani, Mofareh S.; Yilmaz, Elanur; Alidrissi, Eman; van Aerde, Koen J.; Alenezi, Njood; Alghamdi, Hamza A.; Aljubab, Hadeel A.; Al-Hussaini, Abdulrahman A.; Almanjomi, Fahad; Alsaad, Alaa B.; Alsaleem, Badr; Andijani, Abdulrahman A.; Asery, Ali; Ballourah, Walid; Bleeker-Rovers, Chantal P.; van Deuren, Marcel; van der Flier, Michiel; Gerkes, Erica H.; Gilissen, Christian; Habazi, Murad K.; Hehir-Kwa, Jayne Y.; Henriet, Stefanie S.; Hoppenreijs, Esther P.; Hortillosa, Sarah; Kerkhofs, Chantal H.; Keski-Filppula, Riikka; Lelieveld, Stefan H.; Lone, Khurram; MacKenzie, Marius A.; Mensenkamp, Arjen R.; Moilanen, Jukka; Nelen, Marcel; Ten Oever, Jaap; Potjewijd, Judith; Van Paassen, Pieter; Schuurs-Hoeijmakers, Janneke H.M.; Simon, Anna; Stokowy, Tomasz; van de Vorst, Maartje; Vreeburg, Maaike; Wagner, Anja; van Well, Gijs T.J.; Zafeiropoulou, Dimitra; Zonneveld-Huijssoon, Evelien; Veltman, Joris A.; van Zelst-Stams, Wendy A.G.; Faqeih, Eissa A.; van de Veerdonk, Frank L.; Netea, Mihai G.; Hoischen, Alexander. 2019. Exome sequencing in routine diagnostics: A generic test for 254 patients with primary immunodeficiencies. Genome Medicine. 1-15.
  • Vydra, Natalia; Janus, Patryk; Toma-Jonik, Agnieszka; Stokowy, Tomasz; Mrowiec, Katarzyna; Korfanty, Joanna; Dlugajczyk, Anna; Wojtas, Bartosz; Gielniewski, Bartlomiej; Widlak, Wieslawa. 2019. 17β-estradiol activates HSF1 via MAPK signaling in erα-positive breast cancer cells. Cancers. 1-14.
  • Håvik, Aril Løge; Bruland, Ove; Aarhus, Mads; Kalland, Karl-Henning; Stokowy, Tomasz; Lund-Johansen, Morten; Knappskog, Per. 2018. Screening for viral nucleic acids in vestibular schwannoma. Journal of Neurovirology. 730-737.
  • Korfanty, Joanna; Stokowy, Tomasz; Chadalski, Marek; Toma-Jonik, Agnieszka; Vydra, Natalia; Widlak, Piotr; Wojtas, Bartosz; Gielniewski, Bartlomiej; Widlak, Wieslawa. 2018. SPEN protein expression and interactions with chromatin in mouse testicular cells. Reproduction. 195-206.
  • Szoltysek, Katarzyna; Janus, Patryk; Zajac, Gracjana; Stokowy, Tomasz; Walaszczyk, Anna; Widlak, Wieslawa; Wojtas, Bartosz; Gielniewski, Bartlomiej; Cockell, Simon; Perkins, Neil D; Kimmel, Marek; Widlak, Piotr. 2018. RRAD, IL4I1, CDKN1A, and SERPINE1 genes are potentially co-regulated by NF-?B and p53 transcription factors in cells exposed to high doses of ionizing radiation. BMC Genomics. 813.
  • Janus, Patryk; Szoltysek, Katarzyna; Zajac, Gracjana; Stokowy, Tomasz; Walaszczyk, Anna; Widlak, Wieslawa; Wojtas, Bartosz; Gielniewski, Bartlomiej; Iwanaszko, Marta; Braun, Rosemarie; Cockell, Simon; Perkins, Neil D; Kimmel, Marek; Widlak, Piotr. 2018. Pro-inflammatory cytokine and high doses of ionizing radiation have similar effects on the expression of NF-kappaB-dependent genes. Cellular Signalling. 23-31.
  • Filipska, Martyna; Skrzypski, Marcin; Czetyrbok, Katarzyna; Stokowy, Tomasz; Stasilojc, Grzegorz; Supernat, Anna; Jassem, Jacek; Zaczek, Anna J; Bigda, Jacek. 2018. MiR-192 and miR-662 enhance chemoresistance and invasiveness of squamous cell lung carcinoma. Lung Cancer. 111-118.
  • Stokowy, Tomasz; Polushina, Tatiana; Sønderby, Ida Elken; Karlsson, Robert; Giddaluru, Sudheer; Le Hellard, Stephanie; Bergen, Sarah E.; Sullivan, Patrick F.; Andreassen, Ole Andreas; Djurovic, Srdjan; Hultman, Christina M.; Steen, Vidar Martin. 2018. Genetic variation in 117 myelination-related genes in schizophrenia: Replication of association to lipid biosynthesis genes. Scientific Reports. 1-8.
  • Supernat, Anna; Vidarsson, Oskar Valdimar; Steen, Vidar Martin; Stokowy, Tomasz. 2018. Comparison of three variant callers for human whole genome sequencing. Scientific Reports. 1-6.
  • Tangen, Ingvild Løberg; Fasmer, Kristine Eldevik; Konings, Gonda F; Jochems, Arthur; Delvoux, Bert; Xanthoulea, Sofia; Stokowy, Tomasz; Strand, Elin; Berg, Hege Fredriksen; Auriola, Seppo; Trovik, Jone; Häkkinen, Merja R.; Haldorsen, Ingfrid S.; Krakstad, Camilla; Romano, Andrea. 2018. Blood steroids are associated with prognosis and fat distribution in endometrial cancer. Gynecologic Oncology. 46-52.
  • Markiewicz, Aleksandra; Nagel, Anna; Szade, Jolanta; Majewska, Hanna; Skokowski, Jaroslaw; Seroczynska, Barbara; Stokowy, Tomasz; Welnicka-Jaskiewicz, Marzena; Zaczek, Anna J. 2018. Aggressive Phenotype of Cells Disseminated via Hematogenous and Lymphatic Route in Breast Cancer Patients. Translational Oncology. 722-731.
  • Bredrup, Cecilie; Stokowy, Tomasz; McGaughran, Julie; Lee, Samuel; Sapkota, Dipak; Cristea, Ileana; Xu, Linda; Tveit, Kåre Steinar; Høvding, Gunnar ; Steen, Vidar Martin; Rødahl, Eyvind; Bruland, Ove; Houge, Gunnar. 2018. A tyrosine kinase-activating variant Asn666Ser in PDGFRB causes a progeria-like condition in the severe end of Penttinen syndrome. European Journal of Human Genetics.
  • Bukowska-Ośko, Iwona; Perlejewski, Karol; Nakamura, Shota; Motooka, Daisuke; Stokowy, Tomasz; Kosińska, Joanna; Popiel, Marta; Płoski, Rafał; Horban, Andrzej; Lipowski, Dariusz; Caraballo Cortés, Kamila; Pawełczyk, Agnieszka; Demkow, Urszula; Stępień, Adam; Radkowski, Marek; Laskus, Tomasz. 2017. Sensitivity of next-generation sequencing metagenomic analysis for detection of RNA and DNA viruses in cerebrospinal fluid: The confounding effect of background contamination. Advances in Experimental Medicine and Biology. 53-62.
  • Wojtas, Bartosz; Pfeifer, Aleksandra; Oczko-Wojciechowska, Malgorzata; Krajewska, Jolanta; Czarniecka, Agnieszka; Kukulska, Aleksandra; Eszlinger, Markus; Musholt, Thomas; Stokowy, Tomasz; Swierniak, Michal; Stobiecka, Ewa; Chmielik, Ewa; Rusinek, Dagmara; Tyszkiewicz, Tomasz; Halczok, Monika; Hauptmann, Steffen; Lange, Dariusz; Jarzab, Michal; Paschke, Ralf; Jarzab, Barbara. 2017. Gene expression (mRNA) markers for differentiating between malignant and benign follicular thyroid tumours. International Journal of Molecular Sciences.
  • Ngcungcu, Thandiswa; Oti, Martin; Sitek, Jan Cezary; Haukanes, Bjørn Ivar; Linghu, Bolan; Bruccoleri, Robert; Stokowy, Tomasz; Oakeley, Edward J.; Yang, Fan; Zhu, Jiang; Sultan, Marc; Schalkwijk, Joost; van Vlijmen-Willems, Ivonne M.J.J.; HELLELAND, CHARLOTTE; Brunner, Han G.; Ersland, Kari Merete; Grayson, Wayne; Buechmann-Moller, Stine; Sundnes, Olav; Nirmala, Nanguneri; Morgan, Thomas M.; van Bokhoven, Hans; Steen, Vidar Martin; Hull, Peter R.; Szustakowski, Joseph; Staedtler, Frank; Zhou, Huiqing; Fiskerstrand, Torunn; Ramsay, Michele. 2017. Duplicated enhancer region increases expression of CTSB and segregates with keratolytic winter erythema in South African and Norwegian families. American Journal of Human Genetics. 737-750.
  • Oczko-Wojciechowska, Malgorzata; Swierniak, Michal; Krajewska, Jolanta; Kowalska, Malgorzata; Kowal, Monika; Stokowy, Tomasz; Wojtas, Bartosz; Rusinek, Dagmara; Pawlaczek, Agnieszka; Czarniecka, Agnieszka; Szpak-Ulczok, Sylwia; Gawlik, Tomasz; Chmielik, Ewa; Tyszkiewicz, Tomasz; Nikiel, Barbara; Lange, Dariusz; Jarzab, Michal; Wiench, Malgorzata; Jarzab, Barbara. 2017. Differences in the transcriptome of medullary thyroid cancer regarding the status and type of RET gene mutations. Scientific Reports. 1-11.
  • Neveling, Kornelia; Mensenkamp, Arjen R.; Derks, Ronny; Kwint, Michael; Ouchene, Hicham; Steehouwer, Marloes; Lier, Bart Van; Bosgoed, Ermanno; Rikken, Alwin; Tychon, Marloes; Zafeiropoulou, Dimitra; Castelein, Steven; Hehir-Kwa, Jayne; Thung, Djie Tjwan; Hofste, Tom; Lelieveld, Stefan H.; Bertens, Stijn M.M.; Adan, Ivo B.J.F.; Eijkelenboom, Astrid; Tops, Bastiaan B.; Yntema, Helger; Stokowy, Tomasz; Knappskog, Per; Vetti, Hildegunn Høberg; Steen, Vidar Martin; Boyle, Evan; Martin, Beth; Ligtenberg, Marjolijn J.L.; Shendure, Jay; Nelen, Marcel R.; Hoischen, Alexander. 2017. BRCA testing by single-molecule molecular inversion probes. Clinical Chemistry. 503-512.
  • Stokowy, Tomasz; Wojtas, Bartosz; Jarzab, Barbara; Krohn, Knut; Fredman, David; Dralle, Henning; Musholt, Thomas; Hauptmann, Steffen; Lange, Dariusz; Hegedüs, László; Paschke, Ralf; Eszlinger, Markus. 2016. Two-miRNA classifiers differentiate mutation-negative follicular thyroid carcinomas and follicular thyroid adenomas in fine needle aspirations with high specificity. Endocrine (Basingstoke). 440-447.
  • Swierniak, Michal; Pfeifer, Aleksandra; Stokowy, Tomasz; Rusinek, Dagmara; Chekan, Mykola; Lange, Dariusz; Krajewska, Jolanta; Oczko-Wojciechowska, Malgorzata; Czarniecka, Agnieszka; Jarzab, Michal; Jarzab, Barbara; Wojtas, Bartosz. 2016. Somatic mutation profiling of follicular thyroid cancer by next generation sequencing. Molecular and Cellular Endocrinology. 130-137.
  • Stokowy, Tomasz; Garbulowski, Mateusz; Fiskerstrand, Torunn; Holdhus, Rita; Labun, Kornel; Sztromwasser, Pawel Szymon; Gilissen, Christian; Hoischen, Alexander; Houge, Gunnar; Petersen, Kjell; Jonassen, Inge; Steen, Vidar Martin. 2016. RareVariantVis: New tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data. Bioinformatics. 3018-3020.
  • Stokowy, Tomasz; Gawel, Danuta R.; Wojtas, Bartosz. 2016. Differences in miRNA and mRNA Profile of Papillary Thyroid Cancer Variants. International Journal of Endocrinology. 1-10.
  • Janus, Patryk; Stokowy, Tomasz; Jaksik, Roman; Szoltysek, Katarzyna; Handschuh, Luiza; Podkowinski, Jan; Widlak, Wieslawa; Kimmel, Marek; Widlak, Piotr. 2015. Cross talk between cytokine and hyperthermia-induced pathways: identification of different subsets of NF-κB-dependent genes regulated by TNFα and heat shock. Molecular Genetics and Genomics. 1979-1990.
  • Stokowy, Tomasz; Wojtas, Bartosz; Krajewska, Jolanta; Stobiecka, Ewa; Dralle, Henning; Musholt, Thomas; Hauptmann, Steffen; Lange, Dariusz; Hegedüs, László; Jarzab, Barbara; Krohn, Knut; Paschke, Ralf; Eszlinger, Markus. 2015. A two miRNA classifier differentiates follicular thyroid carcinomas from follicular thyroid adenomas. Molecular and Cellular Endocrinology. 43-49.
  • Korfanty, Joanna; Stokowy, Tomasz; Widlak, Piotr; Gogler-Piglowska, Agnieszka; Handschuh, Luiza; Podkowinski, Jan; Vydra, Natalia; Naumowicz, Anna; Toma-Jonik, Agnieszka; Widlak, Wieslawa. 2014. Crosstalk between HSF1 and HSF2 during the heat shock response in mouse testes. International Journal of Biochemistry and Cell Biology. 76-83.
Short communication
  • Perlejewski, Karol; Popiel, Marta; Laskus, Tomasz; Nakamura, Shota; Motooka, Daisuke; Stokowy, Tomasz; Lipowski, Dariusz; Pollak, Agnieszka; Lechowicz, Urszula; Caraballo Cortes, Kamila; Stępień, Adam; Radkowski, Marek; Bukowska-Ośko, Iwona. 2015. Next-generation sequencing (NGS) in the identification of encephalitis-causing viruses: Unexpected detection of human herpesvirus 1 while searching for RNA pathogens. Journal of Virological Methods. 1-6.

Se fullstendig oversikt over publikasjoner i CRIStin.

http://www.ncbi.nlm.nih.gov/pubmed/?term=Stokowy+T

Deep sequencing in biomedicine;

NORMENT - Norwegian Center for Mental Disorders Research;

Discovery of causative variants in rare genetic disorders;